Gossypium arboreum (tree cotton): 108468806
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Entry
108468806 CDS
T05776
Name
(RefSeq) LOW QUALITY PROTEIN: intron-binding protein aquarius
KO
K12874
intron-binding protein aquarius
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108468806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108468806
Spliceosome [BR:
gab03041
]
Complex B
Other components
Prp19-related factors
108468806
Complex C
108468806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
AAA_30
ResIII
UvrD_C_2
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA
AAA_16
Motif
Other DBs
NCBI-GeneID:
108468806
NCBI-ProteinID:
XP_017625151
LinkDB
All DBs
Position
3:40562522..40571220
Genome browser
AA seq
1543 aa
AA seq
DB search
MTKVHGTGVYDFKRHHVAEYPVELADKPETKPPHSSSLPSSITLSEIQRDQLTRIAAANW
LKXXXSGGSKPEKPFDPQLVKEIYETELTVKSEGKSQRKTVPLQRVMILEVSQYLENYLW
PNFDAETASYEHVMSMILMVNEKFRENVAAWGCFYDRKDVFTGFLERVLRLKEGRELTIA
EKTNYLVFMINAFQSLEDEIVRETVLRLASLRSWHSLSYGRFQMELCLNPDLIKKWKRMI
KKESDDAKKLGVHLDPLSSLEVNFLRNLIEEFLEVLDHKVFTQKNPVSEDDELNASSIFD
QVDDASILYCERFMEFLIDLLSQLPTRRYLRPLVADVAVVAKCHLSALYRHEKGKLFAQL
VDLLQFYENFEINDHVGTQLTDDEVLQSHYDRFQSFQLLAFKKVPKLQELALANVGAIHK
RVDLSKKLSVLSPEELKDLVCSKLKLVSNEDPWSDRVDFLIEVMVSFFEKHQSQKEAINA
LPLYPNEQIMWDESVVPSINYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRE
DIQEAIPHLLSYINNEGETAFRGWSRMAVPIREFKITEVKQPNIGEVKPASVTAAITYSI
SSYKSQIRSEWDALKEHDVLFLLSISPLFKPLSAEEEAKASVPQKLGLQYVRGCEIIEIR
DEEGTLMNDFSGRTKREEWKPPKGELRTVTVALDAAQYHMDVTDIAEKGAEDVYGTFNVL
MRRKPKENNFKAILESIRDLMNEYCIVPDWLHKIFLGYGHPSAAQWINMPDLLETVDFKD
TFLNAGHLKESFSHYQVCFVDSDGRETLDPRPPFRIKLPRSLKSDTHAPSENGRSDTGVN
DAKMVDACVEKEKLIVEAYIPPDPGPYPQDQPKQNSVRFTPTQIGAIISGIQPGLTMVVG
PPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMERDVPARYLLRLGQGE
QELATDLDFSRQGRVNAMLVRRLELLSEVERFARSLQLPEDVGYTCETAGYFWLLHVYSR
WEQFIAACAGNEDKPAFVQDHFPFKEFFSNTPQAVFTGQSFEKDMRAAKGCFRHLKTMFQ
ELEECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQ
ILEIETFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRL
GIPYIELNAQGRARPSIAELYNWRYRDLGDLPSVKEEAIFYRANAGFSYDYQLVDVPDYH
GRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRRCL
PYDFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCR
RSLFEQCYELQPTFQRLLQRPDHLALNLNEGTSFTERHVDDIGHPYLVSGVEEMANIVFG
RIDQLQQARAMYQYMAYSEQLMGTSEEQNNEQDSTSPNQAMEVDTSVAENGGINNDVHES
NGQEAKEDGEDHANGQDGVLPSEDQPNTENETQVSTNDENTVT
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaggttcacggaaccggcgtttacgacttcaagcgccaccatgtggcggagtac
ccggttgagttagccgacaaaccggaaacgaaacctcctcacagttcatcccttccgagc
tctattactttgtctgaaatccagcgggaccagctgactagaatagcagccgcgaattgg
ctgaagnnnnnnnnnagcggtggttcgaagcctgaaaagccgttcgatcctcagctggtt
aaggagatttatgagaccgagcttacggtgaagtctgaagggaagtctcagaggaaaact
gtgccgttgcagagggttatgatattggaggttagtcagtatttggagaattacttatgg
ccgaattttgatgctgagacggcttcgtatgagcatgtcatgtccatgattttgatggtc
aatgagaagtttcgagagaatgtggctgcttggggatgcttttatgataggaaggatgta
ttcacaggattccttgagagggttcttcggcttaaggagggaagagaattaaccattgca
gagaaaacgaattatctggttttcatgatcaatgcttttcagagtttggaagatgaaatt
gtcagggaaactgtccttagattagcaagtctgcgatcttggcacagtttgtcgtatggt
cgttttcagatggaactttgtctaaatccagatttgatcaagaaatggaaaagaatgata
aagaaagaatctgatgatgccaagaagctaggagtgcatcttgatcccttatcttcattg
gaagttaacttcttgagaaatctgatagaagagtttcttgaggttcttgatcataaggtt
tttacccagaagaatcctgtcagtgaagatgatgagcttaatgcttctagtattttcgat
caagttgatgatgcttctattttgtactgtgaaaggtttatggagtttctcattgattta
ttgagtcagctgccaacaaggaggtatctgaggcctcttgtggctgatgtagctgtagtt
gccaaatgccatttaagtgctctttatagacatgaaaaagggaaactctttgcacaactt
gtggacttgttacagttctatgaaaattttgagataaatgatcatgttggcactcagttg
acggatgatgaggtgctccaatctcattatgatcgttttcaatccttccaactgcttgct
tttaagaaagttcccaagttgcaagaacttgcactggccaatgttggtgcaatacacaag
cgggtggatctctcaaagaaattgtctgtactttctcctgaagaattaaaggacttggtt
tgctctaagctcaaactggtttcaaatgaagatccttggtcagacagggttgattttctt
attgaggttatggtctctttttttgagaagcaccagtctcaaaaagaagccataaatgct
cttcctctctacccaaatgagcagattatgtgggatgaaagtgttgtgccgagtattaat
tactctggtgaaggttgtctcgctcttcctaagctgaacctgcaattcttaacactccat
gattatcttctaaggaatttcaatctcttccgtctggagtctacttatgaaattcgtgag
gacatccaggaagccattcctcaccttctttcctatatcaataatgagggagaaactgct
ttccgtggctggtcaagaatggctgtgccaattagagaattcaagatcactgaggtaaag
cagccaaatattggagaagtcaagcctgcttctgtaactgcagcgattacatacagcatt
tctagttataaatcacaaataagatcagaatgggatgcccttaaggagcatgatgtttta
tttttgctatctattagccccttatttaaacctctaagtgcagaggaagaggctaaggct
agtgtgccgcagaagcttggtctgcagtatgtacgaggatgtgaaattattgagattcgt
gatgaggaggggactctcatgaatgatttcagtggaagaactaaacgtgaggaatggaag
ccaccaaaaggtgaactgagaactgtgactgttgctttagatgctgcacagtatcacatg
gatgtcactgacattgctgaaaaaggtgctgaagatgtttacgggacgttcaatgtgttg
atgaggaggaagcctaaggaaaataacttcaaagcaattttagagtctatcagagatctt
atgaatgaatattgtattgttcctgattggttgcataaaatatttttgggctatgggcat
ccttctgctgcacagtggataaacatgcctgatcttctggagacagtggatttcaaagat
acttttcttaatgcaggccatctgaaagagagtttttcacattatcaggtttgctttgtt
gattcagatggtagggaaactttggatccaagaccaccattccgcatcaagcttcctcgg
tcacttaaaagtgatactcatgctccatcagaaaatggaagatctgatactggtgtcaat
gatgccaagatggtagatgcttgtgttgagaaagaaaaactaattgttgaagcatatatc
cctcctgacccaggtccttatcctcaagatcaaccaaaacagaactctgttagatttaca
cctactcagattggagcaatcatatcaggtattcagcctggattaactatggttgtgggt
ccaccaggaacggggaaaactgatacggcagtgcaaatattgaatgttctctatcacaat
tgcccatcccagagaacattaataattactcattctaatcaagctttgaatgaccttttt
gagaagataatggagagagatgtgcctgctcgctatcttcttcgtcttggtcagggtgag
caagagctagcaactgacttggacttcagtaggcagggccgtgtgaatgcaatgcttgtt
cgacggctggaactgcttagtgaggtagagaggtttgcaaggtcactacaacttcccgaa
gatgtagggtatacttgtgaaactgctggatatttttggttgctccatgtgtattcacgc
tgggagcaatttattgctgcgtgtgcgggtaatgaagataaaccggcatttgtccaagac
cacttccctttcaaagagttcttctccaacacccctcaggcagtctttactggccaatca
tttgagaaagacatgcgggcagccaagggttgcttccgtcatcttaagactatgttccaa
gagcttgaagagtgcagggcatttgaattgctcaaatcaacagctgatcgagccaattac
ctgatgaccaagcaggcaaagattgtggcaatgacatgtacccatgcagccctaaagaga
aaagattttcttcaacttggtttcaagtatgacaacttgttgatggaagaaagtgctcaa
attctcgagattgaaactttcatcccaatgttgctccaaaggcaggaggatggttatgca
cgacttaaacgctgcatattgattggtgatcatcaccagctgcctcctgttgtgaaaaat
atggctttccaaaagtatagccatatggatcaaagtttgtttaccagatttgttcgacta
ggtattccttacattgagcttaatgcccagggtagagccaggccaagtatagccgaactt
tacaactggaggtaccgggatttgggggaccttccttcggtgaaagaggaagctatcttc
tatagagcaaatgctggattttcctatgattaccaattagtggatgtacctgactaccat
gggagaggtgagtctgctccctctccttggttctatcaaaatgaaggcgaagctgaatat
gttgtcagtgtctatatatacatgcgattgcttggctaccctgcaaataaaatttccatc
ttgacaacttacaatggtcagaagcttctaattcgtgatgttatcaatagacgatgcctt
ccatatgattttattggtccaccgagtaaggttactacagttgataagtttcaagggcag
caaaatgatttcattttgctttctcttgttcgtactcgctttgtcgggcaccttcgtgat
gttagaagattggtggttgccatgtcacgtgctcgccttggcttgtatgtcttttgtcgc
cgttctctctttgaacagtgttatgaactccaacctactttccagcggctgcttcaaaga
cctgatcatcttgctctaaatttgaacgagggcacatcatttactgaacgtcatgttgat
gacattgggcatccatatcttgttagcggtgttgaggagatggctaacatagtttttggg
agaatagatcaattacaacaggcacgagccatgtaccagtacatggcttattccgaacaa
ttaatgggaacatccgaggagcaaaacaatgaacaggattcaacgtccccaaaccaggca
atggaagttgatacctcagtggctgaaaatggtggaattaataacgatgtacacgaaagc
aacggacaggaagctaaagaagatggagaggatcatgcaaatggtcaagacggggtgcta
ccttcagaggaccaacccaatacggaaaacgaaacccaagttagcacaaatgatgaaaac
acggtgacctag
DBGET
integrated database retrieval system
