Gossypium arboreum (tree cotton): 108469098
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Entry
108469098 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108469098
03041 Spliceosome [BR:
gab03041
]
108469098
03036 Chromosome and associated proteins [BR:
gab03036
]
108469098
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108469098
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108469098
mRNA cycle factors
Common to processing body (P body) and stress granule
108469098
Spliceosome [BR:
gab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108469098
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108469098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108469098
NCBI-ProteinID:
XP_017625476
UniProt:
A0A0B0MM79
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Position
8:1266846..1270883
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AA seq
624 aa
AA seq
DB search
MTRNGVFTESTWKPTRPTRPRYLPPHLRPQNDNAGFLDNATRTPELTRSRFNSHQPARST
RCRGRGRGPRFAGRRNLNWEDEKFDELEVIDDALEGTNETNNNLEAYEDIPVQASGDNIP
PPVATFAEIGLGDGLKKNIRRCNYLKPTPIQRYAIPIAVAGRDLMACAQTGSGKTAAFCF
PIISGVLKDPSLVSGHGDGGGVGGSAAVACPLALILAPTRELSCQIFEEAKKFAYMTGVK
ISVAYGGTPIYQQLRSLEKGVDILVATPGRLVDMIERARVSLGMIKYLALDEADRMLDMG
FEPQIRKIVEQMDMPPPGTRQTMLFSATFPDDIQRLASDFLSDYIFLAVGRVGSSTDLIV
QRVELVQEMDKRSHLLDLLRSQRSNATPHSKHALTLVFVETKRGANELERWLSRNGFPAI
AMHGDKVQMEREQALRSFKSGATPILVATDVASRGLDIPHVAHVINFDMPKNIDDYVHRI
GRTGRAGKCGLATAFFSDKNMPLAKSLTELMKESNQEVPSWLVQHAENHSASGWVRHSGP
DFGGYDFRRGTASSSNYNDTYAVPAIDGYHAAASVNDQPFLSSGNFYSDPSVKTGNVDYL
YTDAAAAPYEYAYGYGSVIASGWD
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgactcggaatggtgtgtttactgagtcaacttggaaaccgactcgcccaactagacca
aggtaccttcctccccatttgagacctcaaaatgacaatgctggctttcttgacaatgct
acccgtacccctgagttaactcgctcacgttttaactctcaccaacccgctcgttccacc
cgctgtcgaggccgtggccgtggaccacggttcgccggtcgccggaacctgaactgggaa
gatgaaaagttcgacgagcttgaagttattgacgacgcgttagaaggaacaaacgagact
aacaacaacttggaagcctacgaggacattccggtacaagcgagcggcgacaacataccg
ccgccggtggcgacatttgcggaaatcggtttgggggatggtttgaagaaaaatataagg
aggtgcaattacctgaagccaacgccaatacaacgctacgctatacccatagcggtagcc
ggtcgggacttgatggcttgtgctcaaacaggatcaggcaaaacggctgccttctgtttt
cccatcatttctggggttttaaaggacccatccttggtttccggtcatggtgatggtggt
ggcgttggcggaagtgcggcggtggcgtgtccccttgcccttattttagctcctaccaga
gagttgtcttgtcagatattcgaagaggcaaagaaatttgcttatatgactggtgttaaa
atctctgttgcatatggagggactcctatttatcagcagttgagaagcttagaaaaaggt
gttgatatactggttgctacacctggccggctggtggatatgattgagagagcaagggtt
tcacttgggatgataaaatatttagctttagatgaggcagatagaatgttggatatgggg
tttgagcctcagattcgtaagattgttgagcaaatggacatgcctccacctggaacaagg
caaactatgcttttcagtgctacatttccagatgatatacagagacttgcttccgatttc
ctttcggactatatatttttggctgttggaagggttggttccagcactgatttgattgtc
cagagagttgaattagttcaagaaatggacaaaagaagccatcttttggatcttcttcgt
tctcaaaggtccaatgcaactccccatagcaagcatgctttaactcttgttttcgtggag
acaaagagaggcgcaaatgaattggaacgttggttatcgaggaacggttttccagccatt
gcaatgcatggtgacaaagtgcagatggaaagagagcaagctctgagatctttcaaaagt
ggtgctactccaatactagttgctactgatgttgcttcacgtggacttgacatccctcat
gttgcacacgttattaactttgacatgccgaaaaacatagatgattacgtgcatcggata
ggtcggaccggccgtgccgggaaatgcggactggctaccgcgttcttcagcgacaagaac
atgcctctagcaaagtcattgactgaattaatgaaggagtcaaaccaggaagttccatct
tggctagtccaacatgctgagaatcactctgccagcggttgggttagacacagtggaccc
gattttggtggctacgacttccgaagaggcacagcatcttcaagcaattacaatgatact
tatgctgttcctgccattgatggttaccatgctgctgcaagtgtcaatgatcaacctttt
cttagcagtggcaacttttactccgatccttctgtcaaaaccggtaatgtcgattatctc
tacactgatgccgccgccgctccatacgaatatgcgtacggttacggatcggttattgcc
agtggctgggactag
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