Gossypium arboreum (tree cotton): 108469422
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Entry
108469422 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108469422
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108469422
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
gab04812
]
108469422
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
108469422
Membrane trafficking [BR:
gab04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
108469422
Cytoskeleton proteins [BR:
gab04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
108469422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
Vps4_C
AAA_5
RuvB_N
AAA_14
NPHP3_N
AAA_22
AAA_16
Mg_chelatase
TIP49
DUF815
IstB_IS21
AAA_2
AAA_25
RNA_helicase
MIT
nSTAND3
TniB
AAA_24
nSTAND_NTPase5
Guanylate_kin
Motif
Other DBs
NCBI-GeneID:
108469422
NCBI-ProteinID:
XP_017625824
UniProt:
A0A0B0PYJ6
LinkDB
All DBs
Position
7:69821819..69826969
Genome browser
AA seq
483 aa
AA seq
DB search
MSFIKDIIDSLSSIISTDSTPYESTQNPSSSTCQNMEGIAGNERTAYKLKGYFDLAKGEI
DKAVRAEEWGLVDDALIHYKNAQRILIEASSTPTPSYIGSSEQEKVKSYRQKISKWQGQV
SERLQVLSRRSGSTSANKNTLTHAQTAAVSPRASNSRRDVLQKSPRNPVVRNQVDKVGSS
KFSQESANGYESKLVEMINTAIVDRSPAVKWDDVAGLEKAKQALMEMVILPTRRRDLFTG
LRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVA
ISKQPSVIFMDEIDSVMSTRLANENDASRRLKSEFLIQFDGVASNPNDLVIVIGATNKPQ
ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQEFSLPGRDLERLVRETEGYSGSDLQ
ALCEEAAMMPIRELGSNILTVKANQVRPLRYEDFQKAMSVIRPSLNKSKWEELEQWNQEF
GSN
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcatcaaagacataatcgactctctaagctcaatcatctcaaccgatagcacg
ccatatgaatcaacgcaaaaccctagttcttccacgtgtcagaacatggagggaatagct
ggaaacgaacgcaccgcgtataagctcaaaggatacttcgatttggccaaaggagagatc
gacaaagcagttcgagcggaagaatggggtttagtagacgacgccctgattcactataaa
aatgcacagcgaattctgatcgaggctagctccactcccacaccttcatatatcggctct
agtgaacaagaaaaggtgaaatcgtataggcaaaagatatcgaaatggcaaggtcaagta
tctgagagactacaggttttaagtcgccgatcaggtagcacatccgcgaacaagaacacc
ttaactcatgcacaaactgctgcagtttcaccaagagcatcaaattctaggagagatgtg
ttacaaaagtctcctcgtaacccggtggtgagaaatcaggttgataaagttgggagttcg
aaattttctcaagaatctgctaatggttatgagtcgaagttggttgaaatgatcaataca
gcaatagttgatagaagccctgctgttaaatgggatgatgttgctggcctagaaaaggct
aagcaagcactaatggaaatggttattctgccaactagaaggcgggacttgttcactgga
cttagaaggccagctagaggtctgcttctttttggtccacctggtaatgggaagaccatg
cttgccaaagcagttgcatctgaatcacaggcaacattcttcaatgtttctgcatcctct
ctaacatctaaatgggtaggagagggtgaaaagcttgttcggactctcttcatggttgct
atatccaaacagccatctgttattttcatggatgaaattgatagtgtcatgtcaaccagg
ttggcaaatgaaaatgatgctagtagacggttgaaatcagagttcttaatccagtttgat
ggagtggcatccaatcctaatgatttagtaattgtcattggtgccactaataagcctcag
gaattggatgatgctgttcttagaagattggttaagaggatatatgtacctcttccagat
gaaaatgttagaagactgcttctaaaacacaaactcaagggtcaagaattttccttacct
ggtcgggacctagaacgacttgtgagggagacggaagggtattctggaagcgatctgcaa
gcgctatgtgaagaagcggctatgatgccaattagagagcttggttcaaatatacttact
gtgaaggcaaatcaggtgagacctctaagatatgaagactttcagaaggcaatgtctgtt
atcaggcccagtttaaacaaaagcaagtgggaagaacttgaacaatggaatcaggagttt
ggctccaactaa
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