Gossypium arboreum (tree cotton): 108469521
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Entry
108469521 CDS
T05776
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108469521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108469521
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108469521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_NWD2_C
Cytochrom_D1
Beta-prop_DCAF4
Beta-prop_NOL10_N
Ge1_WD40
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_VPS8
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
108469521
NCBI-ProteinID:
XP_017625908
UniProt:
A0ABR0P9J2
LinkDB
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Position
7:96605508..96610650
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AA seq
436 aa
AA seq
DB search
MEGNNLEKILQEGNLFRQLNCLIVAHLRHHNLTQAARAVASATMTPLDVEAPPNKLLELV
AKGLAVEKDETLRGVPSSTLFDLGTALGYGLNPDPRVSSVDFSAVQDTKGSSKSFPKHET
RHLSEHKNIARCARFSPDGRFVATGSADTSIKLFEISKIKQMMLPDSKEGPVRPVIRTFY
DHVQPINDLDFHPQSTVLISGAKDNTIKFFDFSKATAKRAFRVIQDTHNVRSVSFHPSGD
FLLAGTDHPIAHLYDVNTFQCYLSANSPEIGVNGAINQVRYSSTGGMYVTASKDGAIRLW
DGVSASCVRAIAGAHRTAEATSACFTKDQRFVLSCGKDSAVKLWEIGTGRLVKQYLGATH
TQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTADKVAKWPSNHIGVPRWIEHSPTEAAF
ISCGTDRSVRFWKENL
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcaataatttggagaaaatactccaagaagggaaccttttcaggcaactcaat
tgccttatcgttgctcatcttcgccatcacaatctcacccaagctgcaagagcagtggct
tcagcaacaatgacgcctttagacgttgaagcccctcctaataagcttcttgagcttgtt
gccaagggtcttgcagtggagaaagatgagacattacgaggggttccttcttctacattg
tttgatttagggactgctttgggttatggcttgaatccggatcctcgagtttcttctgtt
gatttcagtgccgtgcaagatacaaaaggctcgtcaaagagctttccaaagcacgagaca
aggcatctttctgaacacaagaatattgctaggtgcgcaaggtttagtcctgatgggagg
tttgttgctactggaagtgccgacacatcaataaaactttttgaaatatcgaaaataaag
caaatgatgctgccagattcaaaagaaggtcctgtgcgacctgttataaggacattttac
gaccatgtgcagcccataaacgatttggattttcatcctcagagtaccgtgctcatatct
ggggcaaaagataacacaataaaattctttgatttttccaaagctaccgcaaagagagcc
ttcagagttatccaggatactcacaacgtacgatctgtatctttccatccatctggtgat
ttccttctagcaggaactgatcatccaatagcacatttatacgatgttaataccttccaa
tgttatctatctgcaaattcccctgagattggtgttaatggagccataaaccaggtaaga
tattcttctaccggcggcatgtacgttactgcatctaaagatggtgctattcggttgtgg
gatggagtaagtgccagttgtgtgcgagccattgctggtgcccatagaacagcagaggcc
actagtgcatgttttacaaaggatcaaaggtttgttctttcctgtggaaaggattcagca
gtgaagctttgggagattggcactggaagattggtaaagcaatatcttggagctactcac
acgcaattgcggtgccaggctgtttttaatgatactgaagagtttgtgctatccatagat
gaacctagcaacgagattgttatttgggatgctttaacggctgataaagtggcaaagtgg
ccttccaaccatatcggtgtgcctcgttggatcgagcactcaccaactgaggctgccttc
atttcctgtgggactgacagatctgtccggttctggaaggaaaatctctga
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