Gossypium arboreum (tree cotton): 108469684
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Entry
108469684 CDS
T05776
Name
(RefSeq) LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108469684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108469684
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108469684
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108469684
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
108469684
NCBI-ProteinID:
XP_017626162
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Position
7:102148014..102149473
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AA seq
273 aa
AA seq
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MSVLPKGDSVQIREVWNDNLEEEFVLIREIVDTYNYVAMDTEFPGVVLRPVGTFKNVSDY
NYQTLKDNVDMLKLIQLGLTFSDANGNLPTCGTDNFCIWQFNFREFNISEDIFVSDSIEL
LRQCGVDFKKNNEKGIDVKRFGELLMSSGIVLNDDVHWVTFXSGYDFGYLLKLLTCRSLP
DTQTGFFNLIKMYFPMVYDIKHMMKFCNGLHGGLNKLAELLEVERVGVCHQAGSDSLLTS
CTFRKLRDNFFKSVQKYAGVLYGLEVEGGQNSD
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttttgcccaaaggtgattcggttcaaattcgagaagtttggaacgataatctg
gaagaagagtttgttttgatccgtgaaattgttgatacttacaattatgttgctatggat
actgagttcccaggtgttgttctacgccccgttggaactttcaagaacgtaagtgattat
aactaccaaactttgaaagataatgtggatatgttgaaattgatccagttgggtctcact
ttttcggatgccaacgggaatcttcccacttgtggaaccgacaacttttgcatttggcaa
ttcaatttccgcgagtttaatatcagtgaagatatcttcgttagtgattccatcgagttg
ttgcgtcaatgtggggttgattttaagaagaacaatgaaaaaggtattgatgtgaaacgg
ttcggtgagcttttgatgtcgtccgggattgtgttgaatgatgatgtgcattgggtcact
tttncaagcggatatgatttcggatatttgcttaaacttttgacctgcaggagtttgccc
gatactcaaactggcttcttcaatttgatcaaaatgtattttccgatggtatacgatatc
aaacatatgatgaagttctgcaatggcctacatggtggtttaaacaagctggccgagttg
ttagaagtggaaagagttggtgtatgccatcaagctggttcggatagtttgctcacatca
tgcacgtttaggaagttgagggataactttttcaaatcagtacagaaatatgcaggtgta
ctgtatggcttagaggtcgagggcgggcagaattcggattaa
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