KEGG   Gossypium arboreum (tree cotton): 108469700
Entry
108469700         CDS       T05776                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108469700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108469700
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108469700
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     108469700
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40 WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EML_2 Beta-prop_HPS5
Other DBs
NCBI-GeneID: 108469700
NCBI-ProteinID: XP_017626187
LinkDB
Position
8:complement(139005478..139012182)
AA seq 1354 aa
MASTGNPNQTIPFDVQKFFKPTVSNPSNSNFQQQNLSSSPYPTPSPYPSPSPPFFHPQYH
QFYMPPSSPTHATYQDSKSLSFPSPPLSPYNAGTQILALINSSPQNPDFPPQNQPPKLQQ
PPHAEFVGSGGPNVGPSRVPSCKLPKGRRLSGTQVGYDIDTRLSGEVQPQLEVTPITKYG
SDPQLVLGRQIAVNKSYICYGLKGGSIRILNLNTALRSLFRGHTQRITDMAFFAEDVHLL
ASVSLEGRIFVWKVSEGPDEEEKPQITGKIVIAVQILGDEEYVHPRICWHRHKQEVLVAG
IGKHILRVDTMKAGKNEVFSTDAPTPLQCPIDKLIDGIQLVGKHDGEVTDVSMCQWMITR
LVSASTDGTIKIWDDRKSVPLTVLRPHDGQPVYSATFLTAPHRPDHIILITGGPLNQEIK
VWTSASEEGWLLPSNTEKWTCTQTLELKSSAEPQMEEAFFNQVVALSQAGLFLLANAKRN
AIYAVHLEYGSCPSASRMDYIAEFTVTMPILSFTGTSDPPDEHIVKIYCVQTQAIQQYAL
ELCQCIPPPLENIGLEKSDSSVSRDAINTEGFDTFNPSGTRPSDLPLYTSVPKPSARVSS
SENLTAARYPSSPHSIEANTAQELNTSNIDPKPASSALASTASDADIVCVASPPTVPPSP
RLSRKPSGFHNYEDYPVDRQMDTVRSNLSGMHSSEDGSRNDDKKMVSDDKSGAYNPPIIF
KHPTHLVTPSEILMAATSSETTNVNEGKSEGEVHIQDVVVNNDARNAELEVKVVGEARSS
QNNEFGSHGDSQNRNLENREKFFCSQASDLGIQMSRESSAISRDAYVVDESQQVDGVGAS
GSHVKPNIAEEEIDDSRKDLSGKGLESAIPSTYQQSPTSGAKWRKHKGKGSQASAHTSPS
SSAFNSADSTTEPGANSNLPSAAAAFPQIAAMQDMLNQLITTQKEMQKQMSNIVNQPVTK
EGRRLEAALGRSIEKALKANTDALWARFQEENAKNEKLLREHTHQITNLITNFMNKDLAV
MLDKVVKKELAGVGPAVIRTITPAIEKTVTSVINESFQRGVGDKAVNQLEKSVNSKLEAI
VARQIQAQFQTSGKQALQEALRTSVEALVVPAFEISCKALFEQVDSAFQKGMVEHTNAAQ
QQLESASSSLAITLRDAINSASSIAKALSGEFAEGQRKLLAIAAAGANSNAATSFSSQLS
NGPLGGLHDKVVMPMDPTKELSKLLSEGKYEEAFTIALQRSDLSIVSWLCSQVDLRTILS
TAPFPLSQGVLLSLLQQLACDINKDTPRKLTWMVDVATAINPGDQMIAVHVRPIFQEVYK
RVHEISSSPLLTGADHASIRALIYVINYVLMTCK
NT seq 4065 nt   +upstreamnt  +downstreamnt
atggcttcaacggggaatccaaatcaaaccatcccatttgatgtgcaaaagttcttcaaa
cccacagtttctaacccatcaaattccaactttcaacaacaaaatctatcttcttcgcca
tatcctacaccttctccttacccttcaccttctccacctttctttcacccacagtatcac
caattctacatgcctccttcttctcctacccatgctacttaccaagattccaaatccctt
tctttcccttcaccccctcttagcccttacaatgctggcacccaaattcttgcccttatt
aactcttcccctcaaaaccctgatttcccacctcaaaatcaaccccctaaactgcagcaa
ccgcctcacgctgagtttgtgggttctgggggtcccaatgtagggccttcgagggtgccg
agttgtaaattgcctaaaggaaggcggttatcaggcactcaggtgggttatgatattgac
acgaggctgtccggggaggttcagcctcagctcgaagttactcccataaccaagtatggg
tctgatcctcagctggtacttggaaggcagattgctgttaataagtcatacatttgttat
gggttgaaaggaggcagtattaggattcttaatttaaacactgcattgaggtctttgttc
cgtgggcacacgcagaggatcacagacatggccttctttgcggaggatgttcatcttttg
gctagtgtgagtctagagggaaggatatttgtttggaaggtatctgaaggtccagatgaa
gaagagaaaccacagattacagggaagatagttattgctgttcagatattaggcgatgag
gaatatgtacatccacgtatttgttggcaccggcacaaacaagaagttttggtggctggg
attggaaaacacattctgagagttgataccatgaaagctgggaagaatgaagtcttctca
actgatgcacctacacctctccaatgtcctatagacaagttgattgatgggattcagttg
gttggtaaacatgatggagaagttactgatgtttcaatgtgtcagtggatgattacccgt
ttagtgtctgcttctacagatggcacgataaagatatgggatgaccgcaagtcagtgcca
ctaacagtgttgagaccacatgacggccaacctgtttattcagctacattcttaactgct
cctcaccgaccagatcatattatactcataacaggggggcccctaaatcaagaaatcaaa
gtttggacatcagcaagtgaagagggttggcttcttccaagcaatactgaaaaatggact
tgcacccagacattggagttgaaaagttctgctgaacctcaaatggaagaagcattcttc
aatcaagttgttgcattatcacaagctggccttttcttacttgcaaatgctaaaagaaat
gctatttacgctgtacacttagaatatggttcttgtccatctgcttcacgcatggattac
atagcagagttcactgtcactatgcccatattaagttttactgggacaagtgatcctcct
gatgaacatattgttaaaatatattgtgtacagacacaggctatacagcagtatgctttg
gagttatgccagtgcatcccaccaccactggaaaatattggcttggagaagtcagattca
agcgtttctcgtgatgctattaacaccgaaggctttgatactttcaatccatctggaact
aggccttctgacttacccctttatacttcagttcccaaaccaagtgcacgagtaagtagc
tctgaaaatttaactgcagcgaggtatccttcaagcccccattctattgaggcaaatact
gcacaagagctaaacacttcgaatattgatcccaagcctgcttcttctgctttggcatca
acagcaagtgatgctgatatcgtatgtgttgcatcaccaccaacagttcctccaagtccg
aggttatctaggaaaccctctggttttcataactatgaggattatccagttgacagacaa
atggacactgttcgatcgaatttgtctggtatgcattcatcagaagatggttcaaggaat
gatgacaagaaaatggtatcagatgacaaatctggtgcatataatccgcctatcattttc
aagcatccaactcatcttgtgaccccatctgagatattgatggctgcaacatcttctgaa
actactaatgtcaatgagggaaagagtgagggcgaggtgcatattcaggatgtggttgtc
aataatgatgcacgcaatgctgagttggaggtaaaagtcgtgggtgaagcaagatcatct
cagaacaatgaatttggttcccatggagactcccaaaatcgaaatttggaaaatagagag
aaattcttttgctcccaggcttcagatcttggtattcagatgtcgagggagagcagtgcg
atatccagggatgcttacgttgttgatgaatctcagcaagtggatggtgttggtgcatca
gggtcacatgtgaagcctaatattgctgaggaagaaattgatgattccagaaaggatctt
tctggaaagggtttggaatcagccataccttctacatatcaacaatcaccaacatcaggt
gcaaaatggaggaaacataaagggaaaggttctcaggcatctgctcacacttccccttct
tcaagtgctttcaattctgcagattctaccactgaaccaggagcaaattccaatctcccc
tcagctgctgctgcatttcctcaaattgcggctatgcaagatatgcttaatcagctaatt
actacacaaaaggaaatgcagaaacaaatgtcaaatattgtcaaccaaccagttacaaaa
gaaggaagaagactagaggctgctctaggacggagcattgaaaaagctcttaaggccaat
actgatgctctatgggctcgttttcaggaagaaaatgcaaaaaatgagaagctgcttcga
gaacatacacaccagataactaacttgatcactaattttatgaacaaggatttggcagta
atgttggacaaagtagtcaagaaggaattagccggagttggaccagctgttattcgtacc
attactccagcaatagagaaaaccgtaacttcagtgatcaatgagtccttccagagaggg
gttggagataaagcagtgaatcaactagaaaagtctgttaattcgaaactcgaagctata
gttgccaggcaaattcaagcccagtttcaaacttctggcaagcaagcactccaggaggct
ttgaggactagtgtggaagctctagtggtccctgcttttgagatttcatgcaaagccctg
tttgagcaagtagattctgcgtttcagaaagggatggttgagcataccaatgctgctcag
cagcagttagagtctgcaagttcttctttggcaattactttaagggatgccataaactcc
gcttcatcgatcgctaaagccttaagtggggaatttgctgaagggcaacggaaactttta
gcaattgcagctgctggagctaactcaaatgctgcaacttcattttcttcccaacttagc
aatggacctttaggtggtctgcatgacaaggttgttatgcccatggatcccacaaaagag
ctatcaaaattgttatctgaaggcaaatacgaagaagcgttcacaattgcgctgcaaaga
agcgacctctctattgtttcttggttatgttcacaggttgatctacgtacgattctgtca
actgccccttttcctttgagccaaggagtgctgctctccctcttacagcagttggcatgc
gacatcaacaaggacactccacgaaaactcacgtggatggtagacgtggccacagctatc
aacccaggtgaccaaatgattgcggtgcatgtgcgaccaatctttcaggaggtctacaag
agagtgcatgaaataagtagctcgccattgcttacaggtgcagaccatgcgagtatccgt
gctctcatttatgtcatcaactatgttttaatgacttgtaaatga

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