Gossypium arboreum (tree cotton): 108469964
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Entry
108469964 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108469964 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108469964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108469964
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108469964
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_8
ARM_TT21
TPR_10
TPR_19
ARM_TT21_2nd
DUF627
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
108469964
NCBI-ProteinID:
XP_017626591
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All DBs
Position
8:92806618..92817112
Genome browser
AA seq
859 aa
AA seq
DB search
MDLRDSSPSSTPNRDGNAGDDDGVLSVTSALAKDAALYFQSRKFAECVDVLNQLNSKKEN
DPKVLHNIAIAEFFRDGCSDPKKLLEVLNNVKKRSEELALASGEQVESGSNIGNNITSGS
KGSGTTTSLPASNCASIIYADEFDTSVASLNIAVIWFYLHEYAKALSVLEHVYQNIEPID
ETTALHICLLLLDVLLACRDASKSADVLNYMEKAFGVGNVSQGENGNTASQQSRASQQSL
NVVGKSSSDPNSSLISDVSCSDLAASVNASESPLSRTLSEDPLDEMFSTLDIGGQNLARH
AGLTSANDLPRITVDRSISGVDLKLKLQLYKVRLLLLTRNVKLAKREVKHAMNIARGRDS
SMALFLKAQLEYARGNHRKAIKLLMASSNRTDAAMSSMFNNNLGCIYYQLGKYHTSAVFF
SKALSNCSSLQKEKPLKLLTFSQDKSLLITYNCGLQYLACGKPLLAAHCFQKASLVFYKR
PLMWLRLAECCLMAVEKGLVKGSWAPSDRSEVRVSVIGKGRWRRLLIENGTTRNRHVDSV
ERDVWALGDDGQPKLSLPLARQCLYNALHLLNCSELSNSKSILPSDSCLEENELSDGASS
KNSNYKNLPSNDSKASTMPAALINLNGDLKEPKGGTNQEGIQTFISYYEDICRRENQMIK
QALLANLAYVELELENPLKALSAARALLELPGCSRIYVFLGHVYLAEALCLLNKPKEAAE
HLSIYLSGESNIELPFGLEDCEQWRVKKHIDCEEANVGAAAAKNSSPEGLEDFMFLKPDE
ARGTLYANLAAVSAIQGDLERAHHFVTQALSLVPDSSEATMTAIYVDLMLGKSQEAVSKL
KHCSHVRFLPSNQQFNKSS
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgagattcatcaccgtcgtcgactccgaatcgggatggtaacgccggcgac
gacgacggcgtcctctccgtcacttccgccctcgctaaagacgccgctctttactttcag
tctaggaagttcgccgagtgcgtcgatgtcttgaatcagctcaactcgaagaaagaaaac
gatcccaaggttcttcataatattgcaattgcggagttctttcgggatggttgctcagac
ccaaaaaagttgcttgaagtccttaacaatgtcaagaagagaagtgaggagcttgctctt
gcatctggggaacaggtggagtctggtagcaatattggaaataacattacttcaggttca
aaaggaagtggtacaactacaagtcttcctgcttcaaattgtgccagtattatttacgcg
gatgaatttgatacctctgtggcttctctaaacatagcagtcatttggttctaccttcat
gaatacgcaaaggccttatcagttcttgaacatgtttatcaaaacattgaacctatagat
gagacaacagctcttcatatctgcctcttgttgctggatgttctgctagcttgccgtgac
gcgtcaaaatctgcggatgtattgaattatatggaaaaagcatttggtgttggcaatgtg
agccaaggggaaaatggtaacacagcttcgcaacaatcaagagcttcgcaacaatccttg
aatgtagttggaaaatcatcctcagatccaaacagctcattgatctcagatgtttcttgt
tcagacttagctgctagtgtcaatgcctcagagagtcctctatctagaactttatcagag
gatccactggatgaaatgttttcaacactagatattggaggacagaacttagctaggcac
gctggtcttacatctgcaaatgatctacccaggatcacagtcgatagatctatctctggt
gttgatctgaagcttaagttgcaactttacaaggttcgactattgcttctcactagaaat
gtaaagctagctaagcgtgaagtcaagcatgcaatgaatattgctcgagggagagattct
tctatggctctcttcttgaaggcccagcttgagtatgctcgtggcaaccatcgaaaagct
atcaagttgttaatggcatcaagtaatcggacggatgcagcaatgtcaagcatgtttaat
aacaatctaggctgcatttactatcaacttgggaagtatcatacatctgcagtgttcttt
tccaaggcactgagtaattgttcatctcttcagaaagagaagcctctaaagctattaaca
ttctcacaggataaatctctcctcataacatataactgtgggttacagtacttggcctgt
ggaaaaccactacttgcagctcattgtttccagaaagcaagtttagttttctacaaaaga
cccctaatgtggcttcggcttgctgaatgttgtctaatggcggtagagaaaggccttgta
aaaggaagttgggctccatcagacagatcagaagttagagtcagtgttatagggaagggt
agatggaggagacttctaattgaaaatggaactacaagaaacagacatgtagattctgtt
gaaagggatgtctgggctttaggtgatgatgggcaacctaagctttcattacctcttgct
aggcagtgtctctacaatgcactgcacttgttgaactgttctgagttgagtaattcgaag
tctattctaccctcagattcatgcttggaagagaatgaattgagtgatggagcatcttcc
aagaactcaaactataagaacttacccagcaatgattccaaggcttcaactatgccggct
gctctaattaacttaaatggggatttgaaagaaccaaaggggggaactaatcaggagggt
attcagaccttcatctcctattatgaagatatttgcagaagagaaaatcagatgattaag
caagctcttcttgctaacctggcatatgtagagttagaactggaaaatcctttgaaggcg
ctctctgcagcacgagctctcttagaactgccaggttgttcaagaatttatgtctttcta
ggccatgtctatttggcggaggctttatgtttgctgaacaaacctaaggaagctgcagag
cacttgtccatttatttatctggggaaagtaacatcgaattaccgtttggtctagaggac
tgtgagcagtggcgagtgaaaaagcatattgattgtgaagaagcaaatgttggagcagca
gctgccaagaactcttcccccgagggcttagaggatttcatgtttctcaagcctgatgag
gcacgtggaacactttacgcaaaccttgctgcagtgtctgcaatacaaggcgaccttgag
cgagctcaccatttcgtgacacaagcattgtccctggtacccgacagcagcgaagccact
atgaccgcaatatatgtcgatctcatgcttggtaagtcgcaagaagctgtgtccaagtta
aaacattgtagtcatgtcaggttcctacccagcaatcaacaattcaacaaatcctcctaa
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