Gossypium arboreum (tree cotton): 108469973
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Entry
108469973 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108469973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108469973
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108469973
Spliceosome [BR:
gab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108469973
Complex B
108469973
Complex C
U2 SnRNP specific factors
108469973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108469973
NCBI-ProteinID:
XP_017626604
LinkDB
All DBs
Position
8:complement(136757135..136761400)
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AA seq
775 aa
AA seq
DB search
MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHSHDNYDDNDLDDIDYADNNDTS
NDANTNDPTSNGNGGEDDEIDPLDAFMQGIEEDLKAKPPPKPKEKAERYKEDEDEDDPVE
SFLRSKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGLLEYDSDDNPVVVDKKKIEPIP
ALDHSSIEYEPFNKDFYEEKASISGMSEQEVAEYRKSLAIRVSGFDVPRPVKTFEDCGFA
PELMRAIAKQGYEKPTTIQCQALPIVLSGRDVIGIAKTGSGKTASFVLPMIVHIMDQPEL
QKEEGPIGVICAPTRELAHQIFLEAKKFAKAYGIRASAVYGGMSKLDQFKELKAGCEIVV
ATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM
PRKVEKLAREILSDPVRVTVGEVGTANEDITQHVHVIPSDSEKLPWLLEKLPGMIDEGDV
LVFASKKATVDEIESQLSGKGFKVAALHGDKDQASRMEILQKFKSGIYHVLIATDVAARG
LDIKSIKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGIAYTLITQKEARFAGELVNSLIAA
GQNVSMELMDLAMKDGRFRSKRNARKGGGKKGRGRGGCRSGRGVRGVDYGMGIGYNPESG
NASSQAVQSRNAAVNSLKTGMMAQMKSNFVAASSNSQSQGFNNSSSIRRPTLSGFVSGGT
IGGDINRSQMATSFNTAPTSGLNTSQNTGQNATQSSSERSRDGPRERRRPSGWDR
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgcaaattcggattcgaagggtttgggattaaccgtcaatcaacctacaac
tttgagcgatcccaagctcctcaacgtctatacgtccctccttcctctcgtcattcccac
gacaactacgacgataacgaccttgacgacatcgattatgccgataacaatgatacttcc
aacgacgccaacaccaatgaccccaccagcaatggcaacggaggggaagatgacgaaatc
gaccctctcgacgccttcatgcaaggtattgaggaggatttgaaagcgaagccgcctccg
aagcccaaggagaaggcggagaggtataaagaggatgaagatgaggatgatccggtggag
agttttttgaggtcgaagaaggatgttgggctgaccttggcggcggatgctttgcgtgct
gggtatgattctgatgaggaggtttatgccgctgccaaggctgtagatgcggggttgttg
gagtatgattctgatgataatcccgtggttgtagacaagaagaagattgagccgattccg
gcccttgatcacagttcgattgagtatgagccgtttaataaagatttttatgaggagaag
gcttcaatttcaggaatgagtgagcaggaagttgctgaataccgaaagagtttggctatc
cgcgtttctggttttgatgtcccaagacctgtaaagacatttgaagactgtggttttgca
ccagagctaatgcgagctattgcaaaacaagggtatgaaaagccaacaactattcagtgc
caagccttacctattgtcctctctgggagggatgttattggtatagcaaaaactggttct
ggtaaaactgcttcctttgtgcttcctatgattgtacacatcatggatcagcctgaactt
cagaaggaggagggtccaattggagtgatatgtgcacctacccgagaactagcacaccaa
atcttcttggaagcaaagaaatttgcaaaagcctatgggatacgtgcctctgctgtgtat
ggtggaatgtccaaacttgatcagttcaaggaacttaaggcaggatgtgagatagtcgtt
gctacaccgggtcgattgatagacatgctaaaaatgaaggcactgacaatgacaagagca
acttatttggtacttgatgaggctgatcgaatgtttgaccttgggtttgagcctcaaata
aggtccattgttggccaaatcagacctgaccgacagacattactattttcagcaacaatg
ccccgcaaagttgaaaagttagcaagggaaattctcagtgacccagtcagagttacagtt
ggagaagtgggaacagctaacgaggatattactcagcatgttcatgtaattccttccgac
tctgagaagttaccctggcttcttgagaagctacctggaatgattgatgagggtgatgtt
ttggtgtttgcttccaagaaagctactgttgatgagattgagtctcagctctctggtaag
ggttttaaggttgctgcccttcatggtgataaagatcaggcttctcgaatggaaattcta
caaaagtttaaatctggcatctaccatgttctcatcgcaactgatgttgctgctcgtggt
cttgacatcaagtcaattaagtcagttgtgaactatgatattgcaaaggacatggacatg
catgtgcaccgtattggtagaacaggtcgtgctggtgacaaagatggtattgcgtatact
ctgataactcaaaaggaggctcggtttgctggtgaattggtaaatagtttaattgctgct
gggcagaatgtttccatggaactgatggatcttgctatgaaggacgggagatttaggtcc
aagcgtaatgcaagaaaaggaggtgggaagaaaggcagaggaaggggcggctgcaggagt
ggtcgaggtgtgcgtggagttgattatggcatgggtattggatataatccagaatccggt
aatgcttcatctcaggctgttcaaagtcgaaatgctgcggtaaattctctcaaaactggc
atgatggcacaaatgaagagtaactttgttgctgcttcatcaaactctcaaagtcaaggc
ttcaataacagttcaagtatcaggagaccaactctgtctggatttgtatctggcggtacc
attggtggagatataaataggtctcagatggccacttcattcaacactgctcctacatca
ggattgaacacttcacaaaatactggacaaaacgctacccagagtagctcagagaggtct
agagatggaccaagagaaaggcgaaggccctctgggtgggaccgttaa
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