Gossypium arboreum (tree cotton): 108470152
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Entry
108470152 CDS
T05776
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108470152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gab04121
]
108470152
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108470152
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_At1g61320_AtMIF1
Preseq_ALAS
Motif
Other DBs
NCBI-GeneID:
108470152
NCBI-ProteinID:
XP_017626887
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Position
8:complement(35870920..35874307)
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AA seq
586 aa
AA seq
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MQKKTAYSFPDEILEHVFSFIQSGKDRNAASVVCKSWYEIERWCRRKIFVGNCYAVSPTM
VIRRFPDIRSIELKGKPHFADFNLVPDGWGGYVLPWISEMAGAYPWLEEIRLKRMVVTDE
SLELVAKSFTNVQVLVLFSCEGFSTDGLAAIAASCKNLRELDLRDSEVDDLSGHWLNHFP
DTYTSLVSLNISCLGSDDVSFSALERLVGRCPNLRRLLLNREVPLDKIANLLSRAPQLIE
FGTGTYAAELRSDVYSNLAEAFCNCKELKCLSGFWDAVPAYLPVIYSVCSRLTSLNLSYA
PIQNPDLTKLVSQCPSLQRMLVLDYIEDSGLEVLASSCKDLQELRVFPSDPFGEEPNVSL
TEKGLVAVSSGCPKLQSVLYFCRQMSNAALVTIAQNCPNFTRFRLCLLDPKIADYRTLQP
LDVGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGMHAKKLEMLSVAFAGESDLALHHVLSG
CESLRKLEIMNCPFGDKALLANAAKLETMRSLWMSSCSVSLGACKMLGQKMPRLNIEVMD
EKGPPDSRAESDPVDKLYIYRSVAGPRFDMPPFVWTMDEDFASELS
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagaaaacggcgtattcgttccccgacgagattttggagcacgtgttctcgttc
atacaatcgggcaaggaccggaacgcagcgtcggtggtgtgcaaatcgtggtacgagatc
gaacggtggtgtcggaggaagatattcgtggggaactgttacgccgtcagccctacgatg
gtgatcagacggttcccggatatcagatccattgagctaaaagggaagccacacttcgcg
gacttcaatctggtaccggacggttggggcgggtacgtacttccatggatatcggaaatg
gctggagcctatccatggctcgaagagatccggcttaagcgaatggttgtcacggacgag
agcctggagcttgttgctaagtcgtttacgaatgtgcaagtgttggtgctcttttcttgt
gaagggttttcaactgatgggctcgctgccattgctgctagctgcaagaatctgagagag
ctggacttgagagacagtgaagttgatgatttgagtgggcattggctcaaccattttcct
gacacatacacatcccttgtgtctctcaacatttcctgcttaggatccgatgacgttagt
ttttcggccttggagcgcctagttggtagatgtcccaacttgaggaggcttttgctcaac
cgtgaagtgcccctcgataagattgccaaccttttatcccgtgcaccgcagctgattgaa
tttggcactggcacctatgcagctgagctacggtcagacgtgtactcgaacttggctgaa
gctttttgtaattgcaaggaattaaagtgcttgtccgggttttgggatgcagtcccagct
taccttccagttatttactctgtatgctctagattaacatcattgaacttaagctacgct
cccatacaaaatcccgatcttaccaagcttgtaagccaatgtccgagtttgcaacgcatg
ttggtacttgattacatcgaagatagtggacttgaagtgctcgcatctagttgcaaggac
ttacaggaattgcgggtgtttccatctgatccatttggggaagagccaaatgtatccttg
acagaaaagggccttgtcgccgtttcatcgggttgtcctaagctacagtcggttttgtac
ttttgccgtcaaatgtctaatgcagctttagtcaccattgctcagaactgtccaaacttc
actcgttttcgtctttgtcttcttgatccaaaaatagccgactaccggacccttcagcca
cttgatgtaggttttggagccattgttgagcactgcaaggatctgagacgcctttccctc
tctggtctcctcacagatcgtgtgtttgaatatatcgggatgcatgcgaaaaagctagag
atgctgtctgtggcttttgcaggagaaagcgatttggcacttcatcatgtgctttctggg
tgtgaaagtctccggaaactggagattatgaactgccccttcggggacaaggctctatta
gcgaacgctgcaaagctggagacaatgcgatccctttggatgtcttcttgctctgtgagt
ctcggagcatgtaagatgctaggtcaaaagatgcccaggttgaatatcgaagttatggac
gagaagggacctccagattcaagagcagaaagtgacccggtcgataagctctacatatat
agatctgttgccgggccgaggttcgatatgcctccatttgtttggacgatggacgaagat
tttgcatcagagctctcttga
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