Gossypium arboreum (tree cotton): 108470293
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Entry
108470293 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
gab03015
mRNA surveillance pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108470293
09122 Translation
03013 Nucleocytoplasmic transport
108470293
03015 mRNA surveillance pathway
108470293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108470293
03041 Spliceosome [BR:
gab03041
]
108470293
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108470293
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108470293
Spliceosome [BR:
gab03041
]
Complex C
Other components
EJC/TREX
108470293
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108470293
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
108470293
NCBI-ProteinID:
XP_017627081
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All DBs
Position
8:265033..269502
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVTAKANGDAGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTPGQVVALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHVVVGTPGRILA
LTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLMECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagggacaacgacgcttatgaggaagagcttctcgactacgaagaagaa
gaagagaaagcccctgactctgtcactgctaaagccaatggcgatgcgggcaagaagggc
tatgttgggattcacagttcaggattcagagatttccttttgaagccagagctgcttcga
gccattgtggactctggatttgagcacccttccgaagttcaacatgaatgcattccccaa
gctatactgggtatggatgttatttgtcaagctaaatcagggatggggaagactgcggtt
tttgttctatcaacattacaacagattgaacctaccccagggcaagttgttgcccttgtt
ttgtgccatactagggagttagcttaccagatttgtcacgagttcgagaggttcagtact
taccttcctgatatcaaggttgctgtcttctatggtggtgttaacattaaagttcacaaa
gatctactgaaaaatgaatgccctcatgttgttgttggcacacctggaaggatattggct
ctgacaagagacaaggacctttcattgaagaatgtgaggcatttcattcttgatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtccaggagattttcaagatgacc
cctcatgataagcaagttatgatgttttctgccactcttagcaaagaaattcgccctgtc
tgcaagaaatttatgcaagatcccatggaaatttatgtcgatgacgaggccaagttgacc
cttcatggtcttgtgcagcactacatcaaattgagtgagctggagaaaaaccgcaagttg
aatgatctccttgatgcattggattttaaccaagttgttatatttgttaaaagtgtgagc
cgagcagctgagttgaacaagttgctcatggaatgtaattttccctctatatgcattcac
tctggaatgtcacaggaagaaaggttgactcgctacaaaggtttcaaagagggtcataaa
agaattcttgtggccacagatttggttggaagaggaattgatattgaacgtgttaacatt
gttatcaactatgacatgccagattctgctgatacatacctgcatagggttggtagagct
ggcagatttggcaccaagggtcttgcaattacatttgtttcgtctgcttcagattctgat
gtgctcaatcaggtccaggagaggtttgaagtggatattaaggaacttccagagcagatt
gatacatctacatacatgccatcataa
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