Gossypium arboreum (tree cotton): 108470301
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Entry
108470301 CDS
T05776
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108470301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108470301
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108470301
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108470301
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
zf-C2H2_CASZ1_1
Motif
Other DBs
NCBI-GeneID:
108470301
NCBI-ProteinID:
XP_017627090
UniProt:
A0A0B0PES7
A0ABR0NVG3
LinkDB
All DBs
Position
8:complement(142087404..142092562)
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AA seq
664 aa
AA seq
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MSGLLNSSINGSASNLPDSSGRSFATSFSGQSGAASPVFHHAGSLQGLHNIHGSFNVPNL
PGTLASRNSTLSNVPTGGVQQPTGSLSGGRFASNNLPVALSQLSHGSSHGHSGVTNRGGI
SIVGNPGFSSNTNGVGGSIPGILPTSAGIGNRNAVPGLGVSPILGNAGPRITSSMGNMVG
GGNIGRTLSSGGGLSVPGLASRLNLSGNSGSASLTVQGQNRLISGVLPQGSPQVLSMLGN
SYPTAGGPLSQSHVQAVNNLSSMGMLNDVNSNDNSPFDINNDFPQLTSRPNSAGGPQGQL
GSLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHDNTMSMMQSQH
FSMGRSAGFNLGGSYSSHRPQQQQQHAPSASGSGVSFSPGNNQDLLHLHGSDIFPSSHSS
YHSQANGPPGVGLRPLNSSNTVSGMGYDQLIQQYQQHQNPSQFRLQQISAVNQSFREPGM
KSMQATQSNPDPFGLLGLQSVIKMTDPDLTSLALGIDLTTLGLNLNSSENLHKTFRSPWS
DEPAKGDPEFTVPQCYYANQPPALHQGYFSKFSVDALFYIFYSMPKDEAQLYAANELYNR
GWFYHKEHRSWFIRVPNVEPLVKTNTYERGSYHCFDPKSFETIRKDNFVIHYEMLEKRPA
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggattacttaattcttctatcaacgggtcggcatctaatcttccagacagtagc
ggacgttcttttgcaacatctttctctggtcagtctggtgctgcctcccctgttttccat
cacgctggctctcttcagggactgcataatattcatggtagctttaatgttcccaatctg
cctggcacgcttgcatcaagaaactcaacgttaagtaatgttccaactggtggtgttcaa
caacctactgggagcctttctggtggaagatttgcatcaaataatctcccagttgcactt
tctcagttatctcacggcagctcccatggtcattcaggagtaaccaatagaggaggtatt
agtattgtaggaaaccctggatttagtagtaacacaaatggagttggtggctctatacct
ggtattctcccaacctctgcaggaatcggtaaccgcaatgctgttccaggattgggagta
tccccaattctgggaaatgcaggtcctaggataacaagttctatgggaaacatggttggt
gggggcaacatcgggaggacattaagctctggtggagggttatctgtgcctggtcttgca
tctcgtctgaatttaagtggcaatagtggatctgcaagtttaactgtgcagggacagaat
cggttgataagtggtgtgcttcctcaaggatctcctcaggtactttcaatgttaggcaat
tcttatccaactgctgggggtccactttcccagagtcatgttcaagctgtgaacaatctt
agttctatgggcatgttgaatgatgtgaactcaaatgacaattccccttttgacataaac
aatgatttccctcagttgacaagtcgtcctaattctgctggtgggcctcaaggacaattg
ggttcattacgaaaacaaggtcttagtcccattgttcaacaaaaccaagagttcagcatt
caaaatgaagatttccctgcattaccaggatttaaaggtggtaatgctgattatgcaatg
gatttgcaccagaaagaacaactacatgacaataccatgtctatgatgcagtctcagcac
ttctctatggggagatcagcaggatttaacttgggtggatcttattcatctcatcgccca
cagcagcagcagcaacatgctccatcagcaagtggtagcggggtctccttttcacctgga
aacaaccaagatcttctccatttacatggctcagatatattcccgtcatctcattcaagc
taccactcacaggccaacggaccacctggagttggtctaagacctttaaattcctcaaat
acggtttctggcatgggttatgaccagcttattcagcaatatcagcaacatcagaaccct
tcccaatttcgtcttcaacagatatcagctgtcaatcaatcatttagggaaccaggcatg
aaatcaatgcaagccacacagtctaatccagacccatttggtttacttggtttgcaaagt
gtgataaagatgactgatcctgatttgacttcccttgcactcggaattgatctgacaaca
cttggtttaaatttaaattcatcggaaaatcttcacaagacttttcgttctccgtggtct
gatgaaccagctaagggtgacccagagttcactgtgccacaatgttattacgctaaccaa
ccacctgcattacatcaaggctatttttcgaaattttctgtggatgcattgttctatata
ttttacagcatgccaaaagacgaagctcaactatatgccgcaaatgaactttataataga
ggctggttttaccacaaggagcatcgatcatggttcataagagtccccaatgtggagcca
ctggttaagacaaacacatatgagagaggttcttatcactgttttgatccgaagtcattt
gaaacaatccgtaaggacaattttgtcattcattacgagatgttggaaaaaagaccggct
ttacctcaacattaa
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