Gossypium arboreum (tree cotton): 108470731
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Entry
108470731 CDS
T05776
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03030
DNA replication
gab03420
Nucleotide excision repair
gab03430
Mismatch repair
gab03440
Homologous recombination
gab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108470731
03420 Nucleotide excision repair
108470731
03430 Mismatch repair
108470731
03440 Homologous recombination
108470731
03460 Fanconi anemia pathway
108470731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gab03000
]
108470731
03032 DNA replication proteins [BR:
gab03032
]
108470731
03400 DNA repair and recombination proteins [BR:
gab03400
]
108470731
Transcription factors [BR:
gab03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108470731
DNA replication proteins [BR:
gab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108470731
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108470731
MMR (mismatch excision repair)
108470731
DSBR (double strand breaks repair)
HR (homologous recombination)
108470731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
Motif
Other DBs
NCBI-GeneID:
108470731
NCBI-ProteinID:
XP_017627662
UniProt:
A0A0B0N129
LinkDB
All DBs
Position
1:19866770..19870177
Genome browser
AA seq
626 aa
AA seq
DB search
MAKSVSQDAISTILANPSPDSSSDIPEIIVQVLDLKLTGNRYTFNASDGKMKLRAIFPSN
MSSEIITGSVQNKGLVRILDYTLNDIPNKSEKYLIVTKCEVVSPALETEIKAEVETEEHD
TVLKKPKLENEARYEAKADVSSIILKPKQEIVSKSAAQIVHEQRTNMAPSSRMAMTRRVH
PLVSLNPYQGNWMIKVRLTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARK
FYEKFQLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENSVVEEASNEETFIPETKFNFV
PIDQLGPYVNGRELVDIIGVVQSVNPVSNIKRKIDNENIPKRDLIVADETKKTVVVSLWN
ELANNIGQELFDNADKSPIVAIKSLKVSDFQGVSLSTLGKSSVMINPDIPEAKKLRSWYD
SEGKGSSMASIGLGLSPSSKTGARSMYTDRVSLTHITSNPSLGDEKPAFFSIKAFVSLIR
PEQAMWYRACKTCNKKVTEAVGSGYWCEGCQKNDEECNLRYIMVSKISDTRGEAWVSAFN
EQAEKIVGCSADELDKLKSEQGDIDGYQQKLKEATWVPHLFKVSVTQNEYNNEKRQRITV
RAVAPINFAEESRFLLEEIKKMRNPQ
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatctgtgagccaagatgcgatttcaacgattttggctaacccatctcccgat
tcttcttcagatatccctgaaatcatcgttcaggtcttggatcttaagctcactggcaac
cgttacacgtttaatgcaagtgatgggaagatgaaactgagagcgatttttccatcaaac
atgtcatctgaaatcattacaggcagtgtccagaacaagggtcttgtcaggattcttgat
tataccctcaatgatatccccaacaaatctgaaaagtatttgattgtaacaaaatgcgag
gtagtatctcctgcacttgagacagaaattaaagctgaagtcgaaactgaggaacatgac
actgttttaaagaagccgaagcttgaaaatgaagctaggtatgaggctaaagctgacgtg
tctagtattattttgaagccaaagcaggaaattgtttcaaagtctgcggctcaaatagta
catgagcaacgaacaaacatggctccatcatcacggatggcaatgacaagaagagtgcat
cctcttgtttcattgaatccttaccagggcaattggatgattaaagttcgtctcacaagc
aagggaaacatgcgtacttataagaatgctagaggagaaggttgtgttttcaatgtggag
ttaacagatgaagatggtacacaaatacaagccacaatgtttaatgaagctgctaggaag
ttctatgagaagtttcaactggggaaggtctattacatatcaagaggaacactaaaagtt
gcaaacaaacagtttaagactgttcaaaatgattatgaaatgactttgaatgagaattcc
gtggtggaagaggcttctaatgaagaaacgtttattcctgaaactaaattcaactttgtc
cctattgatcaattaggcccttatgttaatggacgggagcttgttgatattattggagtt
gttcaaagtgtcaaccctgtatcaaacattaaaaggaagattgacaatgagaatattcca
aagagggatctgattgttgcagatgaaacgaagaagacagtagtcgtttctttgtggaat
gagcttgcaaataatattggccaggaattgtttgacaatgctgataaatctcctatagta
gcaattaaatcactcaaagttagtgattttcaaggtgtatctttgtcaacattgggcaaa
agtagtgtgatgattaatccagatatacctgaagcaaagaagttgagatcttggtatgat
tcggaagggaaagggagttccatggcctccatcggcttaggtttgagtccttcatccaag
actggggcaagatctatgtatactgatagggtttcccttactcatatcactagtaaccca
tctttgggtgatgaaaagcctgcatttttcagtattaaagcatttgtcagcttgatcagg
cctgagcaagcaatgtggtaccgtgcttgcaaaacatgcaacaagaaagttactgaagct
gttggatctggctattggtgtgagggatgccagaaaaatgatgaagagtgtaatttaaga
tacataatggtctcaaagatctctgatacaagaggtgaagcctgggtttcagcctttaat
gaacaagcagagaaaattgttggatgctcagctgatgaacttgataaactcaagtcggag
caaggggatattgatggataccaacaaaagttgaaggaagcaacttgggttcctcatctt
ttcaaagtcagtgttacacaaaatgagtataacaatgagaagcggcaaaggataacagta
agggctgttgctccaatcaactttgctgaagaatccaggtttctgcttgaagagatcaag
aagatgagaaatcctcagtag
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