Gossypium arboreum (tree cotton): 108470792
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Entry
108470792 CDS
T05776
Name
(RefSeq) LOW QUALITY PROTEIN: BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108470792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108470792
04121 Ubiquitin system [BR:
gab04121
]
108470792
03036 Chromosome and associated proteins [BR:
gab03036
]
108470792
03400 DNA repair and recombination proteins [BR:
gab03400
]
108470792
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108470792
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108470792
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108470792
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
108470792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4
zf-C3HC4_4
zf-RING_2
zf-HC5HC2H_2
zf-RING_6
Prok-RING_4
RTT107_BRCT_5
PHD_NSD
PTCB-BRCT
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
108470792
NCBI-ProteinID:
XP_017627789
LinkDB
All DBs
Position
7:4686369..4691320
Genome browser
AA seq
678 aa
AA seq
DB search
MSFSTKQNNSRAMNPWVLHLQKLGLELKCPLCLNLFKRPLLLPCDHLFCDSCVARTEFGS
ECPICKVQCANRDLRPLTFMENIVGIYRSLDSAFSANLSHSIEDGVGKNEKFDKCSMQRR
ATDVGYETPNKDGVDLLRSVSNKQIGSSQESRNRQIIMSQADQASLSPPSYGDTKVSDND
SEHSPENFPAKGAGKRNFDDMVSLKQNDSVLGIDGHLSDSKRQKRLNYGTVDGGAKTMDH
CQSDLQAQNIVTSDCQLRSQNGASLAGTGLLVTSENMNGNRAICEFCQSSKISEATGMML
HYINGKPVTGDASFGSNVIHVHSSCIEWAPQVYFVGDNVKNLKPELAXGAKLKCSRCGLK
GAALGCYVKSCRRSYHFPCAKEIPKCRWDYEDFLVLCPAHSSVKFPSEKSRKAHSAAKFP
NEKPGNCLSADDKVPTESGQLKSNTFSGQPENKKDWVFCGSALSPEEKFLLVKFAKMIGV
TVSKFWRPDVTHVIASTDENGACTRTLKVLMAISNGKWVLKLNWIKECVKAMYPLNEEPY
EVSLDNHGCCDGPKTGRLRVLDNAPKLFDGFSFYFVGDFVSGYKEDLQNLVVTAGGIVLR
RMEELVAHKNGEQTAQTKMVVVYNLDAPQGSELGEEVTIIWQRVSEAQDIATKLGGQVIG
HTWLLESIAACKLQPFVN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttcgactaagcagaataatagcagagccatgaatccttgggttcttcatctc
caaaaactgggtctcgagcttaagtgtcctctctgtttgaacttgtttaagcggccattg
ttgctcccatgtgatcatttgttctgcgattcgtgcgtagcaagaactgagtttggttca
gagtgccctatttgcaaagttcaatgcgcaaatcgagatctaaggcctttgaccttcatg
gaaaatatagtaggaatctatagaagtttggattctgcattttctgccaacctttctcat
tccattgaagatggggttggcaaaaatgaaaaatttgataagtgcagcatgcaaaggcgt
gctacagatgtaggatacgagactcctaacaaagatggagttgatttgttacgatcagtt
tccaataaacaaatagggtcatctcaagagtctaggaataggcagatcatcatgagccaa
gctgatcaagcatccctcagcccgccttcctatggtgatacaaaggtctctgacaatgat
agcgagcatagtcctgaaaactttccagccaagggagcggggaagagaaattttgatgat
atggtaagtctgaagcagaatgattctgttttagggattgatggtcatttaagtgattcc
aagagacaaaagaggttgaactatgggacagtagatgggggtgcaaaaaccatggatcat
tgtcaatcagatctgcaagctcaaaacattgtgacttctgactgtcaattaagatctcaa
aatggagcatctcttgctggtactggtttgcttgtgacatcagagaacatgaatggaaat
agggctatttgtgaattttgccagtcctctaaaatctctgaggccactggaatgatgtta
cattatatcaatggaaaaccagtaacaggagatgcatcatttggctcaaatgttatacat
gttcacagctcgtgtattgaatgggcacctcaagtgtattttgttggtgacaatgttaag
aaccttaaaccagaactggcanagggtgcaaagctgaagtgcagcagatgtggactaaag
ggtgcagcacttggctgttatgtgaagtcttgccgcagaagctatcatttcccttgtgca
aaagagattccaaaatgtcgatgggactatgaggactttcttgtgctttgtcctgcccat
tcttcagtcaagtttccaagtgagaagtctagaaaggcccattctgcagccaagttccca
aatgagaagcctggaaactgtctatctgctgatgataaagtgccaactgaaagtggccag
ctgaaatccaacactttttcgggccagccagagaataaaaaagattgggttttctgtgga
tctgctttgtctcctgaggagaagtttcttctggtcaagtttgcaaaaatgattggtgta
actgtatccaagttttggaggccggatgtcactcatgtgattgcctctacagatgagaat
ggtgcatgcactaggacacttaaagttctcatggccatttcaaacgggaagtgggttctt
aaattaaattggataaaggaatgtgtgaaagcaatgtatcctttgaatgaagaaccttat
gaagttagtcttgacaaccatgggtgttgtgatggtcctaaaactggcagactcagggta
ttggataatgcaccaaagctctttgatggctttagcttttattttgtgggtgactttgtg
tctggttacaaggaagatcttcaaaatctagttgtcactgcagggggtattgttttgaga
agaatggaggaactagtggcacacaaaaatggtgaacagacagctcaaacaaagatggtt
gttgtgtataacctggatgcacctcaaggatctgagttaggagaagaagtaacaattatt
tggcagagggttagtgaagcacaggatatagccacaaaattaggtggacaagtcattggt
catacatggcttttagaatcaattgcagcatgtaagttgcagccttttgtcaactaa
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