KEGG   Gossypium arboreum (tree cotton): 108471040
Entry
108471040         CDS       T05776                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108471040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108471040
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     108471040
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_CAF1B_HIR1 WDR55 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Vps41 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_WDR41 Cytochrom_D1 WD40_RFWD3 Beta-prop_NUP159_NUP214 Beta-prop_VPS8 Beta-prop_SPT8 Tricorn_2nd eIF2A Beta-prop_DCAF12 Ge1_WD40 Beta-prop_WDR11_1st Beta-prop_HPS5 RMC1_N WD40_like Beta-prop_ACSF4 Beta-prop_pof12 CFAP43_N PD40 Beta-prop_LRRK2 DUF5711
Other DBs
NCBI-GeneID: 108471040
NCBI-ProteinID: XP_017628099
LinkDB
Position
7:complement(104457253..104459883)
AA seq 321 aa
MAKSMKLAGLKSVENAHDESVWTATWVPATGSRPPLLLTGSLDETVKVWRPDELDLVRTN
TGHCLGVVSVAAHPSGVIAASAALDSFVRVFDVDTNATIATLESPPSEVWQMQFDPKGTT
LAVAGGGSASIKLWDTATWRLVATLSIPRPEGSKPSDKSGSKKFVLSVAWSPDGRRLACG
SMDGTISVFDVARAKFLHHLEGHYMPVRSLVFSPEHDSRKLYSASDDGHVHIHDVEGKAI
IGAMSGHTGWVLSVDVSPDGEAIATGSSDKTVRLWDFKMRAAIQVMSNHTDQVWAVAFRP
GGRGRLASVSDDKSILLYHCS
NT seq 966 nt   +upstreamnt  +downstreamnt
atggcaaaatcaatgaaactggcaggcctaaaatccgttgaaaacgcccacgacgagtcg
gtttggacggccacttgggttcccgccacgggcagccgcccgccgcttcttttaacgggc
tccctcgacgaaaccgttaaggtgtggaggcctgacgagctcgacctcgtgcgcactaac
actggccactgcctcggcgtcgtttcggtggccgctcatccttccggcgtgatcgccgcc
tccgccgcgctcgacagctttgttcgcgtgttcgacgttgacaccaacgctaccatcgcc
actcttgaatctcctccgtctgaggtctggcaaatgcaattcgatcccaagggtacaaca
cttgcggttgccggagggggtagtgcatcgatcaagttgtgggacactgcgacgtggagg
ttggttgcaactttatcaattcctcgtcctgaaggatccaagccttctgacaaaagcggc
agcaagaagttcgtcctatctgtcgcatggagtcccgatggaaggcgacttgcttgtggc
tcgatggatggtacaatttcggtttttgatgtagctcgtgccaaatttcttcatcacctt
gaaggccattacatgcctgtaaggtctcttgtgttttctcctgaacatgattcacggaag
ctatattcggcctcggacgatggtcatgtgcatatccatgatgttgaagggaaagctata
atcggggccatgtccggtcatactggttgggttttaagcgtagatgtaagtcccgatggg
gaggctattgcaactggctcgagtgacaaaactgttagactatgggattttaagatgaga
gcagctatacaagtaatgagcaatcacacagaccaggtatgggcagtggcgtttcgacct
ggtgggcgaggtcgccttgctagtgtgtccgatgacaagagcatattgttgtatcattgt
tcttga

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