Gossypium arboreum (tree cotton): 108473261
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Entry
108473261 CDS
T05776
Name
(RefSeq) nuclear pore complex protein NUP160 isoform X1
KO
K14303
nuclear pore complex protein Nup160
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108473261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108473261
03036 Chromosome and associated proteins [BR:
gab03036
]
108473261
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108473261
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108473261
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
TPR_Nup160_C
HEAT_Nup120
NUP160_helical
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-GeneID:
108473261
NCBI-ProteinID:
XP_017630264
LinkDB
All DBs
Position
11:122650898..122673732
Genome browser
AA seq
1487 aa
AA seq
DB search
MMVAGTEVPVIGSDSIKWIDLTIPSSINHIDNGGFAPPTADSASATYIHGDDSFYLICRI
HMAQSNVLEIFKLSREFPHSTGLRLSFSHPLSAFALVSAFPTKSHYLLYTVTISGIAYFI
KLSKDLTSIFSRDELIELDVRAYSNCNEPITCMAANHGCLLLGRNDGSVTCFQLGSLHQT
APGFVSELRDDSGVSLGRLWGFMSRGRGVGAVQDLIVKEILGKKVVFVLHHDGILRAWDL
LSRNKILSHAMTVPTSLEGATSTRLWLGEFNSDSSIFPLAILYKSTLEVSMEVIYVYSLC
CSTGDRISLSVDSSVKNFPVDEGGCIDVKLTSDKIWILKDNGLAYHHLFNSSNMEEAHCY
ALQEEFIADQLFQSSEHTSDDLISIISSILSSGKDQIVPFVSSIFLRRILHPGVYHNKVL
RSTFLDYSKHWTDNEFQSLTVDGLKKEIISLVEHESMAESPISIFQGWKNFFCRYFQYWC
KKNAPYALILQSTSGAVGLIRTHSVSLFRSLENTELLTDGLSEDLGDLASFGLDLFNDNS
DREILFEVLRCVVNISQQLGKTASFIFYESFVGRQSISSEEIIPRLLKILGAGYGPSTRA
GYLSGLGSDVALEREQRDHKNLRKFSVDMLLSLHDLCKKAASWRKILDVIESYLQFLVPK
KFTQNSGAETLSCLNNSILVQASCQIAKVMFEYALDILLFVSYLMSIGGQINMVHDDITR
IQVDLVPMIEEIISEWLIILVFCTTPSESPPIEDFSSQLSLLQIDNKINKRSWREKLGKC
DFTLASLLLLHNQSSSGYERHLSLGCLLNPHEIITSVQKFASWIVWGNTGEVSSSFLRRS
TELAIVLLRNGQYDAVEYLLAIFEANARRERIFRSIQGTSGDWCLLQHLLGCCLVAQTQR
GLHGVLKGRKVSEAVSCFFRAASGEGASQALQSLSDEAGLPYLGFNGHVSAAWKLHYYQW
VMQLFEQYNISEGACQFALAALEQVDDLGLGGDGFERDSSNESTTTIKGRLWANVFKFTL
DLNLLNDAYCAIISNPDEESKYICLRRFVIVLYECGAIKQILCNGQLPLIGLADKVEREL
AWKAERTDILAKPNPYKLLYAFEIHRHNWRKAASYMYLYSARLRTDTVQKDQQHMSITLQ
ERLNALSAAVNALQLVHPAYVWIDPLPEGYSLRNEHYPHKKAKTTVKEQSVNDVQSQRLQ
FCIDIEKLEYEIVLTSAEYQLSLANVKWTYSGIGKAPSDLVELLVLTNLYDTAFSVILKF
WKDSDLKRELEKIFSAIALKCCPSTVSSSRTRSQSLLLTSSKDEVVVHGSPGMELTSEQT
KANCHWETLEQYLEKYKNFHSRLPVIVAETLLRTDPHIELPLWLVKMFKENQRERPWGMT
GPEPSSASLFRLYVDYGRYTEATNLFLEYVEAFASTRPLDIINRKRSSAVWFPYNTVERL
WCQLEGLIKSGHMVDQSDKLKRLLYKSLVNHLKQLKVDSVDAVSSAG
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatggtggcagggactgaggttcctgtcattggtagtgactccataaaatggattgac
ctcacgattccttcatccatcaaccacattgacaatggtgggttcgctcctcccacggcg
gattctgcctccgccacttacattcatggagatgattctttctatctcatttgccggatc
catatggctcaatcgaatgttctggaaatcttcaagctctcgcgggaattccctcacagc
actgggctccgccttagtttctctcacccactctcggctttcgctcttgttagcgccttt
ccaaccaagtcacactacttgctttataccgtaactatctccgggattgcttacttcatt
aaactttccaaggacttgacttccattttctccagggacgaacttatagagcttgatgtg
cgtgcttattctaattgtaatgagccaattacttgtatggcagcgaaccatggatgcctt
ttgcttgggagaaatgatggatctgttacttgcttccaacttggctcgcttcaccaaact
gctcctggttttgtatctgaactgcgtgatgattcaggggttagcctaggtcgcttgtgg
ggtttcatgtcaagggggaggggtgttggggctgtgcaggatttaatagtaaaagagatt
cttgggaaaaaagttgtatttgtgcttcatcatgatgggattttaagagcatgggatctt
ttatctcgcaacaaaatattaagtcatgcaatgactgtgccaacatcacttgaaggagct
acatccactaggttatggttgggtgaatttaatagtgattcaagcatttttcctttggcc
atcttgtataagagtacgttggaagttagcatggaggtgatttatgtttatagtctctgc
tgttctacgggggacaggatctccttgtctgtagactcttcagtaaaaaattttcctgtg
gatgaggggggatgcattgatgtcaaacttacgtcagacaagatctggatattaaaggat
aatggattggcgtatcaccaccttttcaatagtagtaatatggaagaagcacactgctat
gctttacaagaagaatttattgcagaccagctgtttcaaagttcagaacacacttcagat
gatcttatatcaataattagttcaattttgtcatctggaaaggatcagattgtgccattt
gtatcttctattttcttgcgcaggattcttcatcctggggtttaccataataaagttctt
cgttcaacttttctagattacagcaagcactggactgataatgaatttcagtcattaact
gtggatggactcaaaaaggagattatttcacttgttgaacatgagagtatggctgaaagt
cctatatctatatttcaagggtggaaaaattttttttgtcgctattttcaatactggtgt
aaaaagaatgctccgtatgcattgattttacagtccacctcaggtgctgttggtctaatc
agaacacattctgtctctttgttccgtagtttggaaaatactgagctgcttactgatggg
ctgtcagaagatcttggtgatcttgctagctttggattggatttatttaatgacaactct
gatcgcgagattctttttgaagttctcagatgtgtcgtaaacatcagccaacagttggga
aaaactgcttcttttatcttttatgaatcatttgttggaagacagagtatctcatctgaa
gagattattcctcgcttgctgaagattttaggagctggatatggtccatcaacaagagca
ggctatttatctggtcttggatctgatgttgctttggagagggaacagagagatcataaa
aatctaagaaaattctctgttgacatgcttttatctcttcacgatctttgcaaaaaagct
gcctcatggagaaaaatcttggatgtcatagagagttatctacaatttcttgtccctaaa
aaatttacacagaattcaggtgctgaaacattatcttgtctcaacaattccatcttggtt
caggcttcctgccagattgcaaaggtgatgtttgagtatgcattggacatccttcttttt
gtaagctatctgatgagcattggtgggcagattaacatggtgcatgatgacataactaga
atacaagttgacttggttccgatgattgaagaaattatttctgagtggcttatcattctg
gttttctgcacaacaccatcagaatcacctccaattgaagatttcagttctcaactttca
ttgctgcagattgataataagatcaataaaagatcatggagggagaaacttgggaaatgt
gatttcacattagcctctttacttctactacataatcaaagttcctctgggtatgagaga
catctttctttgggatgcctccttaatccacatgaaattattacttcagtgcagaagttt
gctagctggatagtatggggaaatactggggaagtttcttcttccttcttgaggcgctca
actgaattagcaattgtccttcttaggaatggccaatatgatgctgttgagtacctgctt
gctatttttgaggccaatgcaagaagggagaggatattcagaagtattcaaggtactagt
ggtgattggtgcttacttcaacatctccttggatgctgtcttgttgctcaaactcagcgt
gggttacatggagttctgaaaggaaggaaagtcagtgaagctgttagctgtttcttcaga
gctgcatcaggagaaggagcttcacaggccttgcagagtttgtctgatgaagcagggttg
ccatatcttggttttaatggtcatgtatctgctgcatggaagcttcattactatcaatgg
gtaatgcagttatttgagcaatataacattagcgagggtgcttgccaatttgctcttgct
gcactggagcaagttgatgatcttggccttggaggtgatggctttgagagagattcatct
aatgaatccactactaccatcaaaggacgtctttgggcaaatgttttcaagtttacttta
gatcttaatcttctgaatgatgcatactgtgcaataatttcaaatccagatgaagagagc
aagtacatctgcttaaggcgctttgttattgttctttatgaatgtggagcaataaagcag
atactctgcaatggtcaattgcccttaattggtttagcagacaaggttgagcgagaactt
gcatggaaggcggagcgtacggatatcttggcaaagccaaatccatacaaattgctttat
gcatttgaaattcacaggcataattggcgaaaggcagctagttacatgtatctatattct
gctcgattacgaactgatacagttcagaaagatcagcagcatatgtcaattacactgcag
gagaggctgaatgcactctctgctgctgttaatgccctgcagcttgtccatcctgcttat
gtttggattgatcccctgcctgagggatattctcttcggaatgagcattacccacataaa
aaggctaaaacaacagtgaaagaacagtctgttaatgatgtacaatctcagaggctgcaa
ttttgcattgatattgagaaacttgaatatgagattgtgctaacatcagcagaatatcag
ctttcactggcaaatgtaaagtggacatattctggaatcggaaaagccccatcagatctg
gttgagcttctagtcctaactaatttatatgacacggccttcagcgttattttaaaattc
tggaaggattccgatctgaagagggaactggaaaagatcttctctgctattgcattgaag
tgctgccctagtacggttagctcatctcggactagatcgcagagtctattattgacttca
tccaaggatgaagtggttgttcacggttcacctggtatggagctcaccagtgaacaaact
aaggcgaattgtcactgggaaactcttgagcagtatcttgagaagtacaaaaactttcat
tctagattgccagtaatagttgctgaaacgcttcttcgtactgatcctcatattgaattg
cctttatggctggttaaaatgttcaaggaaaatcagagggaaaggccttggggaatgact
ggtccagagccaagttcagcatccttgtttcgactatatgttgattatggtcgatataca
gaagcaacaaatctgtttcttgagtatgtagaagcgtttgcatcaacaagaccgctagac
ataattaatcgcaaaagatcatctgcagtatggttcccatataacacagtagagcggctt
tggtgccaactagaggggttgatcaaatcagggcacatggttgaccaatctgataagctc
aaaaggctactgtataaatctttagtaaatcatctaaagcagctcaaggtggattcagtt
gatgcagtttcttccgcaggctaa
DBGET
integrated database retrieval system
