Gossypium arboreum (tree cotton): 108473321
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Entry
108473321 CDS
T05776
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1-like
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108473321
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108473321
Surveillance factors
Other surveillance factors
108473321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
SNaCT1
Motif
Other DBs
NCBI-GeneID:
108473321
NCBI-ProteinID:
XP_017630305
LinkDB
All DBs
Position
11:complement(5968316..5975523)
Genome browser
AA seq
1644 aa
AA seq
DB search
MADGKLDLPDDLLPSKIGSDHFAKDEAWDRNLEEKGLTGLLDDNKDQPTSESSIPLSPQW
LYSKVAEAKTLTVGVSGDTKAPNLLPHGTPGDPNLKDSWRLDSSQDKKEWRRTAPDLEGS
RHWREEERETSLLGRRDRRKEDRRTDISSTMDVPENRTLLPSERRQDVSNRSSGHESRRD
NKWSSRWGLEDKEKDSRNEKRTDAKKEDAPSDKHAIAGGGRTASERENDSRDKWRPRHRL
EVHAGGSASYRSAPGFGLERGRVERSNVGFAAGRGRPNSNGSLQIGRPQSASVIGALPVD
KNMTLNAYSYPRGKLLDMYRKQRTAPNFDNLPDEMDHLSTVTQKEIVVPLAFVPPDAEEE
AVLGDIWKGKTISSEVVYNSFMDASEGKECFSVNMKDSVEPGEKAAVNNNFEGSHAETFY
VSDSQMIMSKEMNSSKECVQRCMPPSDVDVTNALGSDREMGGSTNYMDELKSFDNRQVAD
LKIQKGSNVKNNGSSMKFGGGELPEDSSSLFGFPSLQPTLGCNSINVEGNIPAHSLESAM
PPEDMSLCYLDPQGVIQGPYLGIDIISWFEQGYFGTDLPVRLANAPDGSPFQELGEVMPH
LRRNPGSASSVSADTRMRVPDRFEGSLEETISSSAPAPAQGSAIGHEQQQSLSPFEASGT
NFHLRGPSQSYHSEHQFYEDPNIHNFAVAQADEIFFPGRPGSAGADHLKVSAEMQDPLRH
PASHLSIANEFSKTNAPHRGDELLPEAWSDDHRRNAVFNPNIHLGTTGARPLSHREQEHN
GLDLVQHLMSQKLPNEPLQEKNNFFHALPHSTGFGVENIHSFDLMQSKNLNHQQSVHHSA
PHMEHVLELQFEQQRQLELQRQQRQLELQRQQQLEHQRQQQLEHQRQQQLEHQRQQQLEH
QRQQQLEHQRQQQLEHQRQQQLELQQHQRLLELQRQQQLELQQHQRQLELQRQQELRHHQ
IELLQQLQQQHLQQQNSQAQQILLDQLLQHQISDPGYGQDVFDAARDIQLDQVQLQRHLL
SELQNNSQASRHLDPSLEQIIQAKINQSAVQGQQADFLDFMSQAKYGNMLPLEHQLRLQR
EQFQVQQLSRSLSQQLGMEEDRQLAGSLSVDEVGQFVRNPGIHPQALSMELNGSDLHQKR
LSSFEEQISNIKRNHALREQQQRGTFDPSPTAFARSAHSAAAPGMKVDNVNSLDLAEHLY
MHSNNQLGPFSSGNHTFSQQTLGDAYASRPDLVYHSGKNEQLENSWGGKQMQQLNLEADL
QRRESEVDSSTWASAGGIHEKSKKALMDLLHQKLGIQSTRSSEGDYQYSTSSSRGRESFW
PVSEPQASHFPFTHFSNQEVHVNNSYLEGPQNSNSGALLQDHLFGVAASGGVNQVANCER
MPHKSNPGSFAEDQSLLLGAEDLSSSSYADASLVSKSAVDKELGELEGKEKKNGLKSMLS
RTGSVSGSEDNILEQVEMPLDCADLQSRTHIRHDSLSTGGNGRLYSNEIGLEKSVEDPPN
DRLLSGVPKGVDKVAQISSSQDVFSDQNTVPFVKQKSLTSQAKRTVETEASGKIDVSMRR
TSSYNEAALSEASFMEILKKPALHGAEVPVYGSAFEPPSSDGASQAGRSGKKKGKKGRQI
DPALLGFKVTSNRILMGEIQRLDD
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggaaaactcgatctacccgatgatctcttaccctcaaaaatcggctctgac
cacttcgctaaagatgaagcttgggataggaacttggaggagaaaggactgactgggcta
cttgatgacaacaaagatcaaccaacttcggagagcagcatacctctgtccccacagtgg
ctctactctaaagtagctgaagcaaagacattaactgttggagtatctggggatacaaaa
gctccgaatttgttgcctcatggaacccctggtgacccaaatctgaaagatagttggcgt
ttagatagttctcaggacaagaaagaatggaggaggactgcacctgatcttgaaggcagc
cgacattggcgtgaagaggagagggaaacaagcttacttggtcgaagagatcgcagaaaa
gaagatcgtcgcactgatatttcttcaacaatggatgttcctgaaaataggactttgttg
ccttcagaacgacgtcaagatgttagtaatcgtagttcagggcatgaatctcgaagggac
aacaagtggtcttcgagatggggtcttgaagacaaagaaaaggattctcgaaatgagaag
aggacagatgctaagaaggaagatgccccttctgacaaacatgcaattgctggtggggga
cgcacagcttctgagcgcgagaacgattctcgtgataaatggaggccacgtcatcggttg
gaagttcatgcaggtgggtctgcttcttaccgcagtgctccaggatttggtttggagagg
ggacgagtggagagatcaaatgtgggttttgcagcaggacgaggaaggccaaattccaat
gggagcctacaaattgggaggccacaatctgcttctgttattggagctcttcctgtggat
aaaaacatgacccttaatgcatattcctacccaagaggaaaactccttgacatgtaccgc
aaacaaaggactgctccaaattttgacaacctacctgatgagatggatcatttatccaca
gtaacacaaaaagaaattgttgtgcctttggcatttgttccgcctgatgcagaggaagag
gctgtccttggagatatatggaaaggaaaaacaataagcagtgaagtggtctacaactca
tttatggatgcaagtgaaggaaaagagtgtttctcagttaacatgaaggatagtgttgaa
cctggtgagaaggctgctgtaaacaataattttgaggggagtcatgctgagacattttat
gtgtcagattcacagatgattatgagcaaggaaatgaatagttcaaaagaatgtgtacag
agatgcatgccaccatctgatgtagatgtaaccaatgctttggggtcagatagggagatg
ggtggttcgacaaattacatggatgaattaaaatcttttgataatcggcaagtagctgat
ttgaaaatacaaaagggctctaatgtgaaaaacaatggatcatccatgaaatttggaggg
ggtgagcttcctgaagactcaagttctctgtttggttttccgtcactacagcctactcta
ggctgtaactcgataaatgttgagggcaatattcctgcacattcactggaaagtgctatg
cctcccgaggatatgagcctgtgctatcttgatcctcaaggggtaattcagggaccgtat
ttggggatcgacataatttcatggtttgagcaaggttattttggtacagatttacctgtt
cgattggcaaatgctcctgatgggtcacctttccaagaacttggtgaagtcatgcctcac
ctaagaaggaatcctggttcagcctccagtgttagtgcagataccagaatgcgagtacct
gatcgttttgaagggagcttggaagagaccatatcttcttctgctcctgctcctgctcag
ggatctgccattggacatgagcagcagcaatctttgtcaccttttgaggcatctggtact
aactttcatttaagagggccttctcaaagttatcattctgagcaccaattttatgaagat
ccaaacatccataattttgctgttgcacaagctgatgaaatcttttttccaggaaggcct
ggaagtgctggtgctgaccatttgaaagtttctgctgagatgcaagatcctttgcgtcat
cctgcaagtcatttatccattgcaaatgaattttcaaagaccaatgcacctcatcggggt
gatgagttgctcccagaggcttggtctgatgatcatagaagaaatgctgtgtttaatcct
aacattcatctaggcactactggtgctaggccattatctcacagggagcaagaacacaat
ggtttggacctggtacagcacttaatgtcacaaaagttgcccaatgaacctctgcaagag
aaaaataatttctttcatgccctcccacattcgaccggatttggtgtggagaacatccat
agttttgatctgatgcagagcaagaatctcaaccatcagcagtcagtccatcattcagct
ccgcatatggaacatgttttggaacttcaatttgaacagcagcggcagttggaactacaa
cgccagcagcgtcagttggagcttcagaggcagcagcagttggagcatcagcggcagcag
cagttggagcatcagcggcagcagcagttggagcatcagcggcagcagcaattggagcat
cagcggcagcagcaattggagcatcagcggcagcagcaattggagcatcagcggcagcag
cagttggagcttcagcagcatcaacgtctgttggagcttcagcggcagcagcagttggaa
cttcagcagcatcaaagacagttggaacttcagcggcagcaggagcttcgtcaccaccaa
attgaactgttgcagcagttgcaacaacaacatctacagcagcagaattctcaagctcaa
cagattcttcttgatcaattgctccagcatcagatttctgatcctggctatggtcaggat
gtatttgatgctgctagagacatccaacttgatcaggttcagttacaaaggcatcttcta
agtgaattgcagaataattctcaagcatcaaggcacctggatccatcactggagcagatc
atccaagcaaagattaaccagagtgcagtccaagggcaacaggctgattttttggatttc
atgtcccaagcaaagtatggcaatatgcttcctttggagcatcagctccgtcttcaaaga
gagcagtttcaagtgcagcagttatctaggtcgctgagccaacaattaggaatggaggag
gatagacaacttgctggttctttgtctgtagatgaagttggtcagtttgttaggaatcct
ggcattcatccccaggctctatcaatggagttgaatggttcagatcttcaccagaagagg
ctttcatcttttgaagagcaaatcagcaatattaaaaggaatcatgctttgcgggagcaa
cagcagcgagggacttttgaccccagccctacagcatttgccaggtctgctcattctgct
gctgctcctgggatgaaagtagacaatgtaaattctctagatcttgctgaacatctctat
atgcactctaacaaccaactgggtccattttcttctggtaaccacacttttagccaacaa
actttgggtgatgcatatgcatctcgtccagatttagtctaccactctgggaaaaatgag
cagctagaaaatagttggggtggaaaacagatgcaacaattaaatcttgaagcagatttg
caaagaagggagtctgaagttgattcaagcacttgggcatcagctggagggattcatgaa
aagtctaaaaaagctttaatggaccttcttcaccaaaaacttggtattcaatcgacaagg
tcatcagaaggagattatcagtattctacttcatcttccagaggcagggaaagcttttgg
cctgtttctgagccacaagcttcccattttccttttactcatttctcgaatcaggaagtt
catgtaaacaactcatatctggaaggccctcaaaattccaattcaggtgccttattgcaa
gatcatttgtttggagttgctgccagtggtggtgtcaaccaggtggctaactgtgaacga
atgcctcataaatccaatccgggttcttttgctgaagatcagtcattgttgttgggcgct
gaagatctgtcttctagtagttatgcagatgctagcttagtgtcaaaatctgctgtggat
aaggaattgggcgaactggaggggaaggagaagaaaaatggattgaaaagcatgctttca
aggactggttctgtgtcggggtctgaggacaatattttagagcaagtagagatgcctttg
gactgtgctgacctacaaagtagaacccatatccgtcacgattcacttagtaccggtggg
aatggcaggttgtacagtaatgaaattggattagagaaatctgtagaagaccctcctaat
gataggttactgtctggagtgccaaaaggggttgataaagttgcacagatttcatcatcg
caggatgtattttccgatcaaaacacagtgccatttgtgaagcagaaaagccttacaagt
caggcaaagaggacagtagaaacggaggcatcgggcaagatagatgtgagtatgaggagg
acctcatcttataatgaggctgcactgtctgaagcatcattcatggagattcttaagaag
ccggctcttcatggggcagaggtccccgtgtatggctctgcttttgagccaccatcatct
gatggtgcttcacaagctggacgaagtggcaagaaaaaagggaaaaagggaagacaaatt
gatcctgccttgcttggttttaaggttacaagcaaccgtattttgatgggtgagatccag
cgtcttgacgattaa
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integrated database retrieval system
