Gossypium arboreum (tree cotton): 108473322
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Entry
108473322 CDS
T05776
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1-like isoform X2
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108473322
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108473322
Surveillance factors
Other surveillance factors
108473322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
108473322
NCBI-ProteinID:
XP_017630306
LinkDB
All DBs
Position
11:complement(5934188..5941190)
Genome browser
AA seq
1604 aa
AA seq
DB search
MADGKLDLPDDLIPSKICSDHFPKDEAWDRNLEEKGLTGLLDDNKDQPTSESSIPLSPQW
LYSKVAEAKTLTVGASGDTKTPNLLPHGTAGDPNLKDSWRLDSSQDKKEWRRTAPDLESS
RHWREEERETGLLGRRDRRKEDRRNDISSTMDVPENRILLSAERRQDVSSRSSGHESRRD
NRWSSRWGLEDKEKDSRNEKRTDVKKEDAPSDKQALASGGRTASERENDSRDKWRPRHRL
EVHAGGSASYRSAPGFGLERGRVERSNVGFAAGRGRPNSNASLQIGRPQSASVIGALPVD
KNMTLNAYSYPRGKLLDIYRKQRTAPNFDNLPDEMDHLSTVTQKEIVVPLAFVPPDAEEE
AVLGDIWKGKTISSEVVYNSFMDASEGKECFSVNRKDSVEPGEKAAVNNNFEGSHAETFY
VSDSQMIMSKEMNSSKEGGQRCMPPSDVDVTNALGLDREMGGSTNYMDELKSFDNRQVAD
LKMQKDSNVKDNRSSMKFGVGELPEDSSSLFGFSSLQPRVGCNPISVEGNIAAHSLESAI
PPEDMSLCYLDPQGVIQGPYLGIDIISWFELGYFGTDLPVRLANAPDGSPFQELGEVMPH
LRMDPGSASSVSAVARMRVPDHFEGSLEVPISSSASAPAQGSAIGRELQQSLSPFEASGT
NFQLRGPSQSYHSEHQFYEDPNIHNFAVAQADEIFFSGRPGSAGADPLKVSAEMQDPLRH
PASHLSIANEFSKTNAPHRGDELLPEAWSDDHRRNAVFNPNIHLGTTGARPLSHREQEHN
GLDLVQHLMSQKFPNEPLQEKNNFFHALPHSTGFGVEHIHSFDLMQSKNLNHQQSVHHSA
PHMEHLLELQFEQQRQLELQRQQHQLELQRQQQLEHQRQQQLELQQHQRLLELQRQQQLE
LQQHQRQLELQRQQELRHHQIELLQQLQQQHLQQQNSQAQHILLDQLLQHQISDPGYGQE
VFDAARDIQLDQVQFQRHLLSELQNNSQASRHLDPSLEQIIQAKINQSAVQGQQADFLDF
MSQAKYGNMLPSEHQLRLQREQFQVQQLSRSLSQQLGMEEDRQLAGSLSVDEVGQFVRNP
GIHPQALSMELNGSDLHQKRLSSFEEQISNIKRNHALWEQQQRGTFDPSPTAFARSAHSA
AAPGMKLDNVNSLDLAERLYMHSNNQLGPFSSGNHSFSQQTLGDVYASRPDLVYHSGKNE
QLENSWAGKQMQQLNLEADLQRRESEVDSSTWTSAGGIHEKSKKALMDLLHQKLGIQSTR
SSEGDYQYPTSSSRGRESFWPVSEPQASNFPFTHFSNQEVHVNNSYLEGPQNSNSGALLQ
DHLFGVAANGGVNQVVNCERLPHKSNPGSFAEDQLLLLGAEDLSSSSYADASLVSKSAVN
KELGELEGKEQKNGLKSMISRTGSVSGFEDNILEQVEMPLDCVDLQSRTHIRHGSLCTGV
NGRLYSNGIGLEKSVEDRPDDRLLSGVPKGDDKVAQISSSKDMFSDQNTVPFVKQKSLTS
QAKRTVETEASGRKDVSMRRTSSYNEAVVSEASFMEILKKPALHGAEVPVYGSAFEPASS
DGASQAGRSGKKKGKKGRQIDPALLGFKVTSNRILMGEIQRLDD
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggaaaactcgatctacctgatgatctcataccctcaaaaatctgctctgac
cacttccctaaagatgaagcttgggataggaacttggaggagaaaggactgaccgggcta
cttgatgacaacaaagatcaaccaacttcggagagcagcatacctctgtccccacagtgg
ctttactctaaagtagccgaagcaaagacgttaactgttggagcatctggggatacaaaa
actccaaatttgttgcctcatggaaccgctggcgacccgaatctgaaagatagttggcgt
ttagatagttctcaggacaagaaagaatggaggaggactgcacctgatcttgaaagcagc
cgacactggcgtgaagaggagagggaaacaggcttacttggtcgaagagatcgcagaaaa
gaagaccgtcgcaatgatatttcttcaacaatggatgttcctgaaaataggattttgttg
tctgcagaacgacgtcaagatgttagtagtcgtagttcagggcatgaatctcgaagggac
aacaggtggtcttcgagatggggtcttgaagacaaagaaaaggattctcgaaatgagaag
aggacagatgttaagaaggaagatgccccttctgacaaacaagcacttgccagtggtggg
cgcacagcttctgagcgcgagaacgattctcgtgataaatggaggccacgtcatcggttg
gaagttcatgcaggtgggtctgcttcttatcgcagtgctccaggttttggtttggagagg
gggcgagtggagagatcaaatgtgggttttgcagcaggacgaggaaggccaaattccaat
gcaagcctacaaattgggaggccacaatctgcttctgttattggagctcttcctgtggat
aaaaacatgacccttaatgcatattcctacccaagaggaaaactccttgacatttaccgc
aaacaaaggactgctccaaattttgacaacctacctgatgagatggatcatttatccaca
gtaacacaaaaagaaattgttgtgcctttggcatttgttccgcctgatgcagaggaagag
gctgtccttggagatatatggaaaggaaaaacaataagcagtgaagtggtctacaactca
tttatggatgcaagtgaaggaaaagagtgtttctcagttaacaggaaggatagtgttgaa
cctggtgagaaggctgctgtaaacaataattttgaggggagtcatgctgagacattttat
gtgtcagattcacagatgattatgagcaaggaaatgaatagttcaaaagaaggtggacag
agatgcatgccaccatctgatgtagatgtaaccaatgctttggggttagatagggagatg
ggtggttccacaaattacatggatgaattaaaatcttttgataatcggcaagtagctgat
ttgaaaatgcaaaaggactctaatgtgaaggacaacagatcatccatgaaatttggagtg
ggcgagcttccggaagactcaagttctctgtttggtttttcgtcactacagcctagagtc
ggctgtaacccgataagtgttgagggcaatattgctgcacattctctggaaagtgctatc
cctcctgaggatatgagcctgtgttatcttgatcctcaaggggtaattcagggaccgtat
ttggggatcgacataatttcatggtttgagctaggttattttggtacagatttacctgtt
cgattggcaaatgctcctgacgggtcgcctttccaagaacttggtgaagtcatgcctcac
ctaagaatggatcctggttcagcctccagtgttagtgcagttgccagaatgcgagtacct
gatcattttgaagggagcttggaagtccccatatcttcttctgcttctgctcctgctcag
ggatctgccattggacgtgagctgcagcaatctttgtctccttttgaggcatctggtact
aactttcagttaagagggccttctcaaagttatcattctgagcaccaattttatgaagat
ccaaacatccataattttgctgttgctcaagctgatgaaatctttttttcaggaaggcct
ggaagtgctggtgctgaccctttgaaagtttctgctgagatgcaagatcctttgcgtcat
cctgcaagtcatttatccattgcaaatgaattttcaaaaaccaatgcacctcatcgaggt
gatgagttgctcccagaggcttggtctgatgatcatagaagaaatgctgtgtttaatcct
aacattcatctaggcactactggtgctaggccattatctcacagggagcaagaacacaat
ggtttggacctggtacagcacttaatgtcacaaaagtttcccaatgaacctcttcaagag
aaaaacaatttctttcatgcccttccacattcgactggatttggtgtggagcacatccat
agttttgatctgatgcagagcaagaatctcaatcatcagcagtcagtccatcattcagct
ccccatatggaacatcttttggaacttcaatttgaacagcagcggcagttggaactacaa
cggcagcagcatcagttggagcttcagaggcagcagcagttggagcatcagcggcagcag
cagttggagcttcagcagcatcaacgtctgttggagcttcagcggcagcagcagttggaa
cttcagcagcatcaacggcagttggaacttcagcggcagcaggagcttcgtcaccatcaa
attgaactgttgcagcagttgcaacaacaacatctgcagcagcagaattctcaagctcaa
catattcttcttgatcaattgctgcagcatcagatttctgatcctggctatggtcaggag
gtatttgatgctgctagagacatccaacttgatcaggttcagtttcaaaggcatcttcta
agtgaattgcagaataattctcaagcatcaaggcacctggatccatcactggagcagatc
atccaagcaaagattaaccagagtgcagtccaagggcaacaggctgattttttggatttc
atgtcacaagcaaagtatggcaacatgcttccttcggagcatcagctccgtcttcaaaga
gagcagtttcaagtgcagcagttatctaggtcgctgagccaacaattaggaatggaggag
gatagacaacttgctggttctttgtctgtagatgaagttggtcagtttgttaggaatcct
ggcattcatccccaggctctatcaatggagttgaatggttcagatcttcaccagaagagg
ctttcatcttttgaagagcaaatcagcaatattaaaaggaatcatgctttgtgggagcaa
cagcagcgagggacttttgaccccagccctacagcatttgccaggtctgctcattctgct
gctgctcctgggatgaaattagacaatgtaaattctctagatcttgctgaacgtctctat
atgcactctaacaaccaactgggtccattttcttctggtaatcactcttttagccaacaa
actttgggtgatgtatatgcatctcgtccagatttagtctaccactctggaaaaaatgag
cagctagaaaatagttgggcaggaaaacagatgcaacaattaaatcttgaagcagatttg
caaagaagggagtccgaagttgattcaagcacttggacatcagctggagggattcatgaa
aagtctaagaaagctttaatggaccttcttcaccaaaaacttggtattcaatcgacaagg
tcatcagaaggagattatcagtatcctacttcatcttccagaggcagggaaagcttttgg
cctgtttctgagccacaagcttccaattttccttttactcatttctcgaatcaagaagtt
cacgtaaacaactcatatctggaaggccctcaaaattccaattcaggtgccttattgcaa
gatcatttgtttggagttgctgctaatggtggtgtcaaccaggtggttaactgtgaacga
ttgcctcataaatccaatccgggttcatttgctgaagatcagttattgttgttgggcgcc
gaagatctgtcttctagtagttatgcagatgctagcttagtgtcaaaatctgctgtgaat
aaggaattgggcgaactggaggggaaggagcagaaaaatggattgaaaagcatgatttca
aggactggttctgtgtcggggtttgaggacaatattttggagcaagtagagatgcctttg
gactgtgttgacctacaaagtagaacccatatccgtcatggttcactttgtaccggtgtc
aatggcaggttgtacagtaatggaattggattagagaaatcagttgaagaccgtcctgat
gataggttactgtctggggtgccgaaaggggatgataaagttgcacagatttcatcatcc
aaggatatgttttccgatcaaaacacagtgccatttgtgaagcagaaaagccttacaagt
caggcaaagaggacagtagaaacggaggcatcgggcaggaaagatgtgagtatgaggagg
acctcatcttataatgaggctgtagtgtctgaagcatcattcatggagattcttaagaag
ccggctcttcatggggcagaggtccccgtgtatggctctgcttttgagccagcatcatct
gatggtgcttcacaagctggacgaagtggcaagaaaaaagggaaaaagggaagacagatt
gatcctgccttgcttggttttaaggttacaagcaaccgtatcttgatgggtgagatccag
cgccttgacgattaa
DBGET
integrated database retrieval system
