Gossypium arboreum (tree cotton): 108473439
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Entry
108473439 CDS
T05776
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03020
RNA polymerase
gab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108473439
09124 Replication and repair
03420 Nucleotide excision repair
108473439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108473439
03400 DNA repair and recombination proteins [BR:
gab03400
]
108473439
Enzymes [BR:
gab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108473439
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108473439
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108473439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
108473439
NCBI-ProteinID:
XP_017630481
UniProt:
A0ABR0N437
LinkDB
All DBs
Position
11:complement(24440957..24449585)
Genome browser
AA seq
1853 aa
AA seq
DB search
MDLRFAFSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI
DGMKMIAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LLRTSAWHSESETGSITPGDTQVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKDDVKQLIVKAQNKDL
EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFDRFFRYKIDDENWNPTSYMLPEHIEDLRTIQELRDVFDAEVNKLEADRY
QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV
PGADPLSVEAQKNATLFFCILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE
VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK
TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD
YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT
PYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSY
NPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPY
NSGVSPDYSPSSPQYSPSAGYSPSAPGYSPTSTSQYTPSNKDGRSNKDDRSKR
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgattcgctttctctcccgcggaagtcgccaaggttcgcgtggtccagttc
ggcatcctcagccccgacgaaattcggcaaatgtcagtggtgcagattgagcacagtgaa
acgacggagaggggaaaacccaaagtaggaggtttaagtgacccgcgactgggaacgatt
gaccggaaattgaagtgcgagacgtgtacggctaacatggcagagtgtccagggcatttt
gggcacttggagcttgctaagcctatgtttcatattgggtttatgaaaactgtgcttagt
attatgagatgtgtgtgcttcaattgctccaagattctcgctgatgaggaagatcataaa
tttaagcaagccttgaagataaagaatccaaagaacagactaaaaaaaattttagatgca
tgcaagaataaaactaaatgtgagggtggtgatgaaattgatgtccaaggtcaagataca
gaggaaccggtaaaaaagagccgtggtggatgtggtgctcagcaaccaaagctgagtatt
gatggtatgaagatgattgctgagtacaaggcccaaaggaagaaaaatgatgacccggaa
caacttcctgaacctgtggaaagaaaacagactctaacagctgaacgggttcttagtgtc
ttaaagaggataagtgatgaggactgccaactattaggtttgaatcccaagtatgcccgt
ccagattggatgattcttcaagtacttccaatacctccacctcctgtgagaccctctgtg
atgatggatacatcctctaggagtgaggatgacttaacacatgcattggctatgatcatt
cggcacaatgagaacttgaggagacaggagaggaacgggtcacctgcacatatcatatct
gaatttgcacagttgttgcaatttcatgttgcaacatattttgacaatgagttacccgga
cttccaagggctacacagagatctgggaggcctattaaatctatttgtagtaggcttaag
gcgaaagagggccggattaggggtaatttgatggggaaaagggttgacttttcagctcga
acagtaattacaccagatccaaatatcaatattgatgaacttggagtaccttggagtatt
gctttaaatcttacatatccagaaactgtgacaccatataacattgaaaggttgaaagaa
cttgtggaatatgggcctcatcctccacctggaaagactggtgctaagtacatcataaga
gatgatggacaaaggctagatcttcgttacctaaagaaaagcagtgatcatcacctagaa
cttggttataaggtggagcggcatttaaatgacggagattttgtcctttttaatcgtcaa
cctagtctccataaaatgtcaatcatgggccacagaattaggatcatgccatactcaacg
ttccgtctaaatttgtcagttacttcaccatacaatgctgattttgatggtgatgaaatg
aatatgcatgttcctcaatcatttgagacaagagctgaggttttggagctcatgatggtg
cctaagtgcattgtgtctcctcaatcaaataggccagttatggggattgtccaggataca
cttttaggatgccgtaaaatcaccaagagggataccttcatagagaaggatgttttcatg
aatatattgatgtggtgggaagactttgatgggaaggttcctgcacctgcaattctaaag
ccacgaccactttggacggggaagcaggtttttaatcttatcataccaaaacagataaat
ctattgagaacttctgcatggcattcagaaagtgaaactgggtctatcacccctggggat
actcaagtgcgaatagaaaaaggggaggtgctatctggcactctttgcaagaaaacactc
ggaacatcttctggaagtcttatacatgtaatttgggaagaggtaggtccagatgcagcc
cggaaatttttgggacatacacaatggcttgtcaattattggctgctgcagaatgccttt
agtattggtatcggggatacaatagctgatgcagcaacaatggaaaaaattaatgaaacc
atttctaaagccaaagacgatgtgaaacagcttattgttaaagcccaaaacaaggattta
gagcctgaacctggaagaactatgatggagtcctttgaaaacaaagttaaccaggtgttg
aataaagctcgtgacgatgcaggaaacagtgcacaaaaaagtttgtctgaaagcaataac
cttaaggcgatggttactgcaggatccaagggaagtttcattaacatatcccaaatgaca
gcttgtgttggtcagcagaatgttgagggaaagcgaataccatttgggttcatagatcgt
acattgcctcattttaccaaggacgattatggccccgaaagtcgtggttttgtggagaac
tcttacctgcgtggtttgaccccacaagagttcttttttcatgccatgggtggtagagaa
ggtctcatagatactgcagttaagacttctgagactgggtacatacagaggcgacttgtg
aaggctatggaggatattatggttaaatatgatggaactgtgaggaactcattgggggat
gttattcaattcctctacggtgaagatggtatggatgctgtatggatagaatctcagaag
ctggattctttgaagatgaagaaatcagaatttgatagattcttcagatataaaatagat
gatgaaaactggaatccaacttcttacatgttaccagagcatattgaagatttgagaacc
atccaagaattgcgtgatgtgtttgatgctgaagttaataaacttgaagctgatagatac
cagcttggaacagagattgcagtcacaggtgatagtaattggcctttgcctgttaacttg
aagaggcttatctggaatgcacagaagactttcaaggttgacttccgaagggtgtcagat
ttgcatccagtggaaattgtagattctgttgataagctccaggaaaggttaaaggttgtt
ccaggtgcggatcctctgagtgtggaagcccaaaagaatgccaccctcttcttttgcatt
ttgcttcgcagtactttggctagtaaaagggtgttgcaggagtatagattgacgaaagaa
gcatttgagtgggttattggcgaaatagagtcacggttcttacagtccttagtggcaccc
ggggagatgataggttgtgttgctgctcaatcaattggtgagcccgctactcaaatgact
ctcaacaccttccactatgctggtgtgagtgcaaagaatgttacccttggtgtccccagg
ttgagggaaattattaatgtagccaagaaaatcaagacaccttctctttctgtctacctc
tctcctgaagctagtaaaactaaggagaaggccaagaatgtccagtgtgctttagaatac
actacccttcggagtgttacgcacgctactgaagtatggtatgatccggatccaatgagc
acaattattgaggaggatattgacttcgttaagtcttactatgaaatgccagatgaagag
gttgcaccagaaaagatatccccttggctgcttcgaatagagttgaatcgtgagatgatg
gtcgataagaaattgagtatggctgacatagctgagaagatcaacctggaatttgatgat
gatttgacttgcatatttaatgatgataatgcagagaagttgatcctacgtatccgcatc
atgaatgatgaagccccgaagggtgaattgaatgatgagtctgctgaggatgatgtgttc
ttgaagaagattgagagtaacatgctgacagaaatggcccttcgaggtatcccagacatc
aacaaggtgttcattaaacatagtaaagcaagcaaatttgatgaggctgatgggtataag
actggggaggagtgggtgctggatacagaaggtgtcaatctcttggctgtcatgtgccat
gaagatgttgatgcaaggagaacaacaagcaatcacttgattgaagttattgaagttctt
ggaatcgaagcagttcgtcggtccttgttggatgaattgcgggttgtgatatcgtttgat
gggtcttatgtgaattatcggcatctagctatcctttgtgatacaatgacctatcgtggt
cacttgatggccatcacccgtcatggcatcaaccgtaatgatacaggacctatgatgagg
tgctcatttgaagaaactgttgatattctccttgatgctgctgtttatgctgagtcggat
tatttgaggggtgtaacagagaatataatgttgggccagcttgcaccaattggcacagga
gactgtgccttgtatctcaatgatgagatgttgaagaatgccattgaacttcagctacct
agttacatggaaggtctggaatttggcatgacacctgctcgttctccagtgtcaggaact
ccttatcatgaaggcatgatgtctccaagttacttgctgagcccaaatcttcgtctctca
cccatttcagatgcacagttctcaccttatgttggtggaatggcattctctcctacgtca
tcccctggttacagcccatcatctcctggatacagtccgtcatcacctggttacagtcct
acctctcctggttacagtcctacatctcctgggtacagtcccacctctcctggttacagc
cccacatcacctacttacagtcctagctcaccaggatacagtccgacaagtccagcctac
tctcctaccagcccctcatattctccaacctcaccaagctatagccctacctctccaagt
tacagccctacatctccaagttacagtcctacttctccaagttacagtcccacatccccc
agctatagtcccacttcacccagctacagccccacttcacccgtatatagccctacctca
ccagcatatagccccacttcacctgcatacagccccacttctccatcatacagccctaca
tctccatcgtacagcccgacatctccttcgtacagccctacttcaccgtcctatagcccc
acatctccttcatatagccctacttcacccgcttatagccccacatctcctgggtacagt
ccaacctcaccaagttacagtcccacatcaccaagctatagccctacctctccaagttac
aacccgcagtcagccaagtacagtccgtctctggcatactcaccaagtagtccaaggttg
tctccttccagtccttacagtccaacttcacctaattacagtccaacatcaccatcatac
tcaccgacttctccatcttattccccttcaagcccaacatacagtcctagcagcccatac
aactctggagtgagcccagactacagtccaagctcgccacagtacagtccaagtgctggg
tattctcctagtgcccctggatattcaccgacatcaactagtcagtacactccaagcaat
aaggatggtagaagcaataaggatgacaggagtaaacgataa
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integrated database retrieval system
