Gossypium arboreum (tree cotton): 108473478
Help
Entry
108473478 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108473478 isoform X1
KO
K24155
rabconnectin-3a
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108473478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108473478
Membrane trafficking [BR:
gab04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
108473478
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
108473478
RAVE complex
108473478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WDR55
Beta-prop_EML
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
108473478
NCBI-ProteinID:
XP_017630542
LinkDB
All DBs
Position
11:complement(9561905..9575049)
Genome browser
AA seq
2568 aa
AA seq
DB search
MFPLQHWKDMAGAWATSTSQNATSISEVDPTDHLPLSLLRSQLIPPAPNRSESAIDWLPD
FAGYSWVAYGSSSLLVISHFPSPLSSEQTRMGSIFRQVFEISSVASSPVTAVSWSPVRPS
SGELAAASDNCICLFSHDSATPNSKGSFCWSQNAVLLQSTKVEAVGWTASGDGLIAGGLE
AVLWKRKSKSWEIAWKFKADQPQNMVSASWSIEGPSAAAFSSKDLQIEGVNEASKSVLVF
YSDGSSGFAKTVLGHPQPVSMLQWRPSSRKQLLRDGKHLRRHILLTCCLDGTIRLWSEID
TVRVKKAGSVYDQKTTRRSFCVAAVIEIDNALRGTLGADIFFTWAMEIDGMVKTTEETNQ
YFFREEHKNEVGSCEWLIGFGPGKLVTFWAIHCLDDISPMRFPRVTLWKRLELQGLEVEH
LNRNGLSTLKQQLLLKKVVIMRNCASGPPTVCSSIHLYPCKYLAWSMLYTQMINDTENAP
PSESRTENLLSCSVGGILDIDGHTSKILQVAIHPNVCEVDLVVSLDSNGLLLFWSLSNNS
NAIHGLPTLIPAWRISGKHVTHGKCSKYSSLNWAPLVLAEDRFLLLGHVGGIDCFAVKNF
HGEGDGIECYFICTIPFAGHDPYEDGPTNIYTVPLSLSRNETYMCDGFLLLGIWMKEFRA
LSWEITMHAYDLTRSCSECNFNDDNIVECNARKFEKTISGTRYCLHVTPSSAQLPEPHLH
DQVTSFAVISPGGLTPVQQKLPFHKDSLSCRSPAYVMATGCFDGSIKLWRCSPSEPSISH
KSWELVGMFSAHQGPVTAIQLTSCGRKIATTGSDSPSNTVFSLRIWDSICLPDSGTFILE
DTLSLDEYVVVLNWLALGNGQLLLAVCMRNELRVYVQKRCGGHALLDSKQSPGVQFWFCI
GISHTFSAIHDFLWGPRTTGVVVHASYLSLLSPWLFLLDNKHQTDFYKKFNPESLLDSDI
DMGKGTFSEIFSDHDVVSHKETLIANSNGGCMSDLLKKINTNNGHLSSAFLVGRGQIKCK
SNILLGYWSMLDIVETLARVLPVYHPESLFANIYSGNWKRAYISVKHLVEYLNSSHISEK
RGYHPKISDIVPQMPLSDYIEGILSKSSTVNAFQWNENATSMTSSSQFQSGLLPFAYNFQ
SNASSNAFSSSSTKSGLVDFLEPINKLHELAAITATEKMQILAIVDLLNEVSNPQSASVY
ENLDEPGRRFWVTLRFQQLLFLQRFGRSASLEDLVVDSGLIAWAFHSDCQETLFGSFLPN
EPSWPAMQTLGIGFWFTNATQLRTRVEKLARMQYLKKKDPKDCTLLYVALNRLQVLAGLF
KISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLMGRHQLELAIAFFLLGGDASSAVTV
CAKNLGDEQLALVICRLVEGRGGPLERHLITKLILPSAIERSDYWLASLLEWELGNYSQS
FLTMLGLQGGSAIGSSTLSSCHVAFMEPSIGLYCLMLANKTILRNAAGDQNAGVLARWAS
LMTATSLNRCGLPLEALECLSSSLSILGGTDRENVSDFACSKTSLGILKPSIGGSSPWLL
GGVASHLESYAKFDLALRYISKLMREHPSWPRTSFGSVRANTCSEDYENQYDKLLENFHH
KLHTGLAQFEHKFSLVSSYLINMIFVNLCNNGFWFLGYDMLHGFCREHSQHENHMDDNAF
LYPLFHKPLLKLTEDISSLFSHFLAVCSTTWSPSKLCYRENGMSHEGRSNSGYTWGFYFQ
GVKLSLSSLRAAMRIFSGIFKEVMAPKLLTLLDLYEFYANFASAWLQKNSEGLVLMMQPL
IVTYTSGHTPYEVDMMALKETLNQVPDTVTDVLIDGLEVDKCAEEKQVGELLNLIPEDER
WHIIGAFVWQHMSRFMKHKLNSLAISDDSFLSGFSNDKLSSCAPLSLDVGLGNRSIRENI
RSASWILANLPKIALEHISSHHVKQLGLFLQQKIDNGFNPPTLGWLEEYRLSSRTLHQHL
GQTKDTNSTNQLSASDILWNMCADPTMISESFAQEKVNWSSFLNFKPCRGWDDLYKDIRR
ENESDESQNHEGKISNSSSGGEAGSPSGSVLRNGHAFLSSWQKGTSTEKEVIPFQNPKEI
YKRNGELLEALCVNSINQRQAALASNRKGIIFFNWEDGIPYKGQSDYIWSGADWPHNGWA
GCESTPVPTCVSPGVGLGNQKGAHLGLGGATIGVDTFSRPGRHLTGGGAFGIPGYAGIGA
SGLGWETQEDFEEFVDLPATVENISTRSFSSHPSRPLFLVGSINTHIYLWEFGKDKATAT
YGVLPAANVAPPYALASISALEFDRCGHRFVTAALDGTVCTWQLEVGGRSNIRPTESSLC
FNNHASDVTYITSSGSVIAAAGCSSNGVNVVIWDTLAPSATSRASIVCHEGGARSIAVFD
NDIGSGSVSPLIVTGGKNGDVGLHDFRYIATGKTKRHRHHDSVEISINTSSNADMKTGAS
KQRDQNHGGMLWYMPKAHLGSITKISTVPNTSLFLTGSKDGDVKLWDAKAAKLVHHWSKL
HERHTFLQPSSRGFGGVVRAAVTDIQVVSHGFLSCGGDGSVKLVQLND
NT seq
7707 nt
NT seq
+upstream
nt +downstream
nt
atgttccctcttcagcattggaaggacatggctggggcatgggcaacttccacttctcaa
aacgcaacctccatttccgaggtggatcccaccgatcacctcccgctttccctccttaga
tctcagctcatcccgcctgctcccaatcgatccgaatccgccatagactggttacctgac
tttgccggttactcatgggtagcttacggatcctcgtcccttctcgtgatctctcacttc
ccttctcctctctcctccgaacaaactcgtatgggctcaattttccgtcaagtcttcgag
atctcttctgtcgcttcttcccctgttaccgccgtttcgtggtctccggtcaggccttct
tctggtgagctcgcagcggcctcggataattgcatttgcttgttctctcacgactcagcg
acgcccaattccaaaggttctttttgttggagccagaatgcagtacttttacagtctaca
aaagttgaggcagttggatggacggcttctggggatgggctaatagccggtggactggag
gctgttttgtggaaaaggaagagtaaatcttgggaaatagcttggaaattcaaagcagat
cagcctcaaaatatggtttctgcctcgtggtcaatagaaggcccttccgcagctgcattt
tcttcaaaggatttgcaaattgaaggagtcaatgaggcaagcaagtctgttttggtattt
tacagtgatggaagttctggatttgcaaaaactgtgctaggccatcctcaacctgtttca
atgcttcaatggaggccatcgtcaaggaaacaactgttgagagatggaaaacatttgcgg
agacatatattgttaacatgctgtttagatggaactataagattatggagtgagatagac
actgttagagttaagaaagcaggcagtgtttacgatcagaaaactacaaggaggtcattt
tgtgttgctgctgtaatcgagatagataatgcattacgtggaactttgggagcagatata
ttttttacatgggcaatggaaattgatggtatggttaaaaccactgaagaaactaaccaa
tacttctttagagaagaacataagaatgaagttggcagctgtgagtggttaatagggttt
ggccctggaaaattggttactttctgggcaatccattgtcttgatgacatatcaccaatg
aggttcccccgggttacattgtggaagagactggagcttcagggtcttgaagttgaacat
cttaatagaaatggactttcaactctaaagcaacaattgcttcttaaaaaggttgttatc
atgagaaattgtgcgtctggacccccaactgtatgctcttctatccatttatatccgtgt
aaatatttggcctggtccatgttatatacccaaatgataaatgatacagaaaatgcacct
cctagtgaatctaggactgaaaatttattatcatgttcagtaggaggaattttagatata
gatggtcataccagtaaaatcttacaagttgctatacaccctaatgtttgtgaagttgat
ttggttgtttctttggattctaatgggctacttctgttttggtcactttctaacaattcg
aatgccattcatggccttccaacattgattcctgcatggagaattagtggaaagcatgta
actcacggtaaatgttctaaatattcaagcttgaattgggcacctttagtattggctgaa
gatcggtttcttcttctaggacatgttggaggaattgactgctttgcagtaaagaatttt
catggtgaaggagatggcatagaatgttacttcatatgcactataccttttgcaggtcat
gatccttacgaggatggtccaaccaacatatatacagtaccattgtctttgtctcgtaat
gaaacttatatgtgtgatggatttttacttttgggcatttggatgaaagaatttcgggct
ctttcctgggaaataaccatgcatgcttatgatctgacaagaagctgctctgaatgtaat
ttcaatgatgataatattgttgaatgcaatgcaaggaaatttgaaaaaactatctctggc
acaagatattgtctccacgttactccatcatcagcacagttgcctgaacctcatcttcat
gatcaggtcacaagttttgctgtgatctctcctggtggtttgacacctgtgcagcaaaag
ttaccttttcataaagattccttaagttgtagaagtcctgcatatgttatggccacaggc
tgctttgatggtagtataaaattgtggagatgtagccccagtgaaccatcaatttctcac
aaatcatgggaacttgtgggcatgtttagtgcacatcaaggacctgtcactgctatacaa
ttgaccagttgtggtaggaagattgcaaccactggctcagatagtccgtcaaatactgtc
tttagtcttcgtatatgggactctatatgcctaccagactcggggacttttattttagaa
gacacattgtcacttgatgaatatgttgttgttttaaattggttagccctaggaaacggt
cagttattacttgcagtttgcatgcgcaatgagttgcgtgtatatgttcagaagcgatgt
ggtggtcatgctttgttagactctaaacaatctccgggtgtgcaattctggttttgcatt
gggatcagtcatactttttctgctattcatgatttcttgtggggccccaggactacaggt
gtggttgtgcatgctagttacttgagtcttttaagtccatggctgtttcttttagataac
aaacatcagactgatttctataaaaaatttaacccagaaagccttcttgattctgatatt
gatatgggcaagggcacattttctgaaatttttagtgatcatgatgttgttagtcacaaa
gaaacattaattgcaaatagtaatggaggatgcatgtccgaccttcttaagaagataaat
accaacaatggtcacctatccagtgcatttttagtgggaaggggtcaaataaaatgcaag
tcaaacattttactcggttactggagtatgctagacatagtggagacattagccagagtt
ttgcctgtttatcacccggagtcactctttgcaaatatatattcaggcaattggaaacgt
gcatacatctctgtgaagcatctggttgaatatcttaattctagtcatatttcagagaag
agaggttaccatccaaagatcagtgacattgttccgcagatgcctttatctgattacatt
gaagggattctctccaaaagttcaactgttaatgcattccaatggaatgagaatgctact
tcgatgacatcgtcttcacaatttcaaagtggcttgttgccgtttgcttataattttcag
tctaatgcttccagcaacgcattcagctcgtcttcaacaaaatctggacttgttgacttc
cttgaaccaatcaataagttgcatgagttggcagctataactgccacagagaagatgcag
attcttgcaatcgtagatcttctaaatgaagttagtaatccacagtctgcttctgtttat
gaaaatcttgatgaaccaggtcgaaggttttgggtcacattaaggtttcagcagctgctt
tttttgcaaaggtttggtagatcagcatctttggaagatcttgtggttgactcagggctt
atagcatgggcattccactccgattgccaggaaactctgtttggttcatttctaccaaat
gaaccgtcttggccagcaatgcagacgttgggcattggattttggtttactaatgcaacc
caactgcgcacaagggtggaaaagctggctagaatgcaatatcttaagaagaaagatccc
aaggattgtacactgctgtatgtagcattaaatagacttcaggttttggctggtctattt
aaaattagcaaggatgagaaggataaaccattggttggatttctttcacgcaattttcag
gaggagaaaaataaggcggcagctttgaaaaatgcttatgtcttgatggggagacatcaa
ctagagttggctattgctttttttctgcttgggggtgatgcttcttctgcagttactgtt
tgtgcaaagaaccttggggatgagcagctagcactagtaatatgtagacttgtcgagggg
cgaggtggaccattagagcgtcacttgattacgaagcttatacttccatctgcaattgag
agaagtgactattggcttgcaagccttctagagtgggaattggggaactattctcaatct
ttcctgaccatgcttggtttacaagggggttctgctattggttcatccactctttcatcc
tgccatgttgctttcatggaacccagtataggtctgtattgcctcatgcttgcaaacaaa
actatcctgagaaatgctgcaggggaccagaatgctggagttcttgctagatgggcatct
ttgatgactgctacttccttgaacagatgtgggcttcctcttgaagccttggagtgcctt
tcatcttccctgagtattctggggggtacagatcgagagaacgtatcagattttgcatgt
tctaaaacttcactgggaattttgaaaccttctattggtggttcctctccttggctcttg
ggtggtgttgcttctcaccttgagtcctatgctaaatttgatttggccctccggtatatc
tcaaaattgatgagggagcatcctagttggcctagaacctcctttggatctgttagagca
aacacatgttctgaggattatgagaatcaatatgataaactacttgaaaattttcaccat
aagttgcacacaggacttgcacagtttgagcataagttctcgttggtttcatcctaccta
attaatatgatttttgtcaacttatgcaataatgggttctggttccttggatatgatatg
ttacatggattttgtcgtgaacactcccagcatgagaatcatatggatgacaatgccttt
ttgtatcctcttttccacaagccacttttgaagttgactgaggatatctcctctttgttt
tcgcattttcttgctgtctgcagcacaacatggtccccatcaaaattatgttatagagaa
aatggtatgtcccatgaaggtagatccaactctggatatacctgggggttttattttcaa
ggggtcaaactatcactgtcgagtttaagagcagctatgaggatcttctctggcatcttc
aaagaggtcatggccccaaaacttctcacccttcttgatttgtatgaattttatgcaaat
tttgcatctgcttggcttcagaaaaattcagaaggtttagttttgatgatgcaacccctc
atagttacatatactagtgggcatacgccttatgaagttgatatgatggctttgaaggaa
acgttaaaccaggttccggatacagtgactgatgttttaatagatggccttgaggttgat
aaatgtgctgaggaaaaacaagttggagagctattgaatttgattccagaggatgagaga
tggcatattataggggcttttgtgtggcaacacatgtccagattcatgaaacataagttg
aattcattagccatttctgatgacagttttctttctggcttttccaatgataaactttct
tcttgtgctcctttatcattggatgttggattaggtaacagaagcataagagaaaacatt
aggtcagcatcatggatattagccaacttaccaaaaattgcccttgaacatatttcttct
caccatgtgaaacaacttgggttgttcttacagcagaaaatagataatggatttaaccct
cctactcttggttggttggaggagtatagattgtcttctaggactctacatcagcatctg
ggtcagactaaagatacaaacagcacaaatcagctttctgcttctgatatcttatggaat
atgtgtgctgatcctactatgatatcagaaagttttgcacaagagaaagtgaattggtca
agttttcttaattttaagccttgcagaggatgggatgatttatacaaagacattaggagg
gagaatgaaagtgatgagtcccaaaatcatgaaggtaaaataagcaatagctcttctggt
ggtgaagctggatcaccttctgggagtgtgttacggaacggccatgcttttttaagttcc
tggcagaaaggaacaagcacggaaaaggaggtcatacctttccaaaaccctaaagaaata
tataagagaaatggggagcttctagaggcattgtgtgtcaactccattaatcaaaggcaa
gctgcattggctagcaaccgaaagggcataattttctttaactgggaagatggtatacct
tacaaaggccaatcagattatatctggtctggtgcagattggccacacaatggttgggct
ggttgtgaatcaaccccagttccaacctgtgtatctcctggtgttggtcttggtaatcag
aaaggggctcacctaggactgggcggggcaaccattggtgtggatactttttctagacca
gggagacacctaacaggtggtggagcatttggaattccaggttatgctggtatcggagcc
tctggcttgggctgggagacacaagaggattttgaggagtttgttgatctgcctgccact
gtggaaaacatcagtacgaggtctttctcgagtcatccctcaaggcctttattcctggtt
ggttctatcaatacacatatttacttatgggagtttgggaaggataaagcaacagcaact
tatggagtactgcctgctgcaaatgttgctccaccttatgctcttgcctcaatatcagct
ttggagtttgaccgttgtggacacagatttgttactgctgctcttgatggaactgtttgc
acgtggcaactagaggtgggaggcaggagcaatatccgtccaaccgaatcatctctctgc
tttaataaccacgcatcggatgtcacttacattacttcaagtggatccgtcattgctgct
gctggatgtagctccaatggtgttaatgtggttatatgggatacattggctccgtctgca
acctctcgagcttccattgtttgccatgaaggtggtgcccgctccattgcagtgtttgac
aatgacatcggaagtggttctgtttctcccctaatagtaaccggtggtaaaaatggtgat
gttggacttcatgacttccggtacatagctactggaaagactaaaaggcacaggcaccat
gatagtgttgaaataagcatcaacacatcttctaatgctgacatgaaaacaggagctagt
aaacaacgagaccagaatcatggtgggatgctttggtacatgccaaaggctcacttaggt
agcatcaccaaaatttccaccgtcccaaataccagtttgttcttaacgggaagcaaagat
ggagatgttaaactttgggatgccaaagcagccaaactggttcatcattggtcaaaattg
catgaaaggcacacctttttgcaaccaagttcccgtggtttcggtggcgttgtgcgggct
gctgttactgatattcaagttgtgtcacatggttttctttcatgtggtggggatggctct
gtaaaactggttcaactcaatgattaa
DBGET
integrated database retrieval system
