Gossypium arboreum (tree cotton): 108473532
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Entry
108473532 CDS
T05776
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108473532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108473532
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108473532
mRNA degradation factors
5'-3' decay
Decapping complex
108473532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
108473532
NCBI-ProteinID:
XP_017630645
LinkDB
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Position
11:complement(20952109..20959886)
Genome browser
AA seq
802 aa
AA seq
DB search
MDRSDGKLHNNFSSLSSSVSGFADNALFDASQYEFFGQNAMEEVELGGLEDDEQDAPVFA
SPEDDEYHLFDKGEVVGLGSLSDVDDLATTFAKLNRVVTGPRNPGVIGDRSGSFSRESSS
AADWAQDGEYVNWMDQHLFDADDAQDGKRWSSQPQPYARVSDSKPLYRTSSYPEQQPQLH
RFSSEPIFGPKSNFISFPPPGSKCQQSSPAHLNISALSSGSQPPFSAASLSPLSNSSLHL
AGLSHGLHCGGNVPQLTSPGLSFSSRSHNLWVNHSGLLHGDHAGLLHYMLQQQIPHQNGL
ISPQLMSPQQQRLHHSVQPSLAHFAALQSQLYNAHPPSHKLMLGLADIRDQRTKSSQRKR
QSSRISQQNSDTGSQKSESGLVQFRSKYMSAEEIESILKMQHAATHSNDPYVDDYYHQAC
LAKRSFGSRGKHNFCPSHLKDLHSRSRNSGEQHLHLHADALGKAPLSSIRRPRPLLEVDP
PLGSGDGGSEQKTERPLEEEPMLAARITIEDGLSLLLDVDDIDRLIQFSQPQDGGIQLRR
RRQILLEGMAASLQLVDPLSKGAHAVKCVAKDDIVFLRLVSLAKGRKLVTRFLQLLIPGS
ELVRVVCMAIFRHLRFLFGGLSSDLEAAETITNLAKTVSTCVNGMDLRALSACLVAVVCS
SEQPPLRPLGSPAGDGASVILKSVLERATQLLSYPSGNCSMPNYAFWRASFDEFFTLLTK
YCVNKYETIKQSIQNQSPTMEVIGSEAMRQEMPCELLRSSLPHTNEAQRKLLMDFSQRSV
PMNGANSHAGSTSQINSESVRG
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggatcgatccgatggcaaacttcacaacaacttctcctccttatcttcctcagttagt
ggttttgcagataatgcgctttttgatgcatcccagtatgaattttttggtcaaaatgct
atggaagaagtggagttggggggtctagaagacgatgaacaggatgctcctgtgtttgct
tcccctgaagatgatgagtaccatttgtttgataagggagaggttgtaggtttaggctct
ttatctgatgtggatgatctagctactacttttgcaaagttgaatagagttgttactggg
ccaagaaatccaggagttattggtgatagatctggatctttttcaagggaaagttcttct
gctgctgactgggctcaagatggagaatacgtaaactggatggatcagcatctttttgat
gcagatgatgctcaagacggcaagagatggtcttcgcagccacaaccatatgctcgtgtt
tctgactcaaagcctttgtatagaacttcttcatatcctgagcagcaaccccagctgcat
cgtttctcaagtgaaccaatttttgggccaaaatcgaacttcatatctttccctcctcct
ggtagcaaatgccagcagtcttcacctgctcacctcaatatttctgctctttccagtgga
tctcagccacccttctctgcagcaagcctctctccattgtccaactctagtcttcatctg
gctggtttatcccatggattgcattgtggtggtaatgtgccccagttaacatctcctggc
ctatcttttagtagcaggtcacataatctctgggttaaccactccggtctattacatgga
gatcatgctggtcttttgcattatatgttgcaacagcaaatacctcatcaaaatggtcta
atttccccacagttaatgtcaccacaacagcagagactgcaccattcggttcaaccttct
ttggctcattttgcagctttgcaatctcagctgtataatgctcatcctccatcacataaa
ttgatgcttggactagctgatattagggatcaacgaactaaatcatcacaaagaaagaga
cagagctcgcgtatttcccagcaaaactctgatactggtagccagaaaagtgagagtggg
ttggtgcaattcagatccaagtatatgtctgctgaagagatagagagcattcttaagatg
cagcatgctgccacacatagtaatgatccttatgtagatgattattaccaccaagcttgt
cttgccaaaagatcttttggatccaggggtaaacataatttttgtccatctcacctgaag
gatttacattctcgatcccgtaacagcggagagcagcatttgcatctacatgctgatgca
cttgggaaggcccccctctcttccattcgaagacctcgtcccctgcttgaagttgatcct
cccttaggttcaggtgatggaggttctgaacagaaaactgagaggcctttagaggaggaa
cctatgcttgcagctagaatcaccattgaagatggtctgtctcttcttcttgatgtagat
gatattgaccggctcatacaatttagtcaaccccaggatggtgggatccagctcagacgg
aggcggcagatcctgcttgaaggtatggcagcatcactgcagcttgttgatccacttagc
aaaggtgcgcatgcagttaaatgtgttgccaaagatgacattgtgttcctaagattagtc
tctcttgcaaagggccgtaagctggtcaccaggttccttcagcttcttatccctggaagt
gagcttgttcgagtagtgtgcatggcaattttccgtcacttgagattcttgtttggtggt
ctttcttctgatctggaagcagctgagacaattactaatcttgcaaagactgtttctaca
tgtgttaatggtatggatcttcgtgctctcagcgcttgccttgtagcagttgtttgttct
tcagagcagccaccacttaggcccctgggaagccctgctggggatggtgcttctgttatt
ctgaaatcagttcttgaaagggccactcaacttttaagttatccttctggaaattgcagc
atgccaaattatgctttctggagggcgtcatttgatgaatttttcactcttcttaccaag
tattgcgtgaataaatatgagacgatcaagcaatcaatacagaaccagtctccaacaatg
gaagtgattggttcagaggcaatgaggcaagaaatgccttgtgagcttcttcgttctagt
cttcctcacacaaatgaagctcagaggaagcttttaatggacttttcccagcgttctgta
cccatgaacggagccaattcccatgctgggagtaccagccaaataaactctgaatcagtg
aggggttaa
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