Gossypium arboreum (tree cotton): 108473580
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Entry
108473580 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108473580 isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108473580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108473580
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108473580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
Zn_ribbon_RanBP
GTP_EFTU_D4
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
108473580
NCBI-ProteinID:
XP_017630727
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Position
5:complement(4459388..4465782)
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AA seq
775 aa
AA seq
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MPRKVNYGIDYDDGYDDDYDDYDYGYDVEENMKEPSLQDTIKRGVWRCSVCTYDNDDTMS
SCDICGILRSPSVRNGTYDEKRTVHGICKVSGVSIMAKSLFASRPHQMSKKEVDSQQQND
DFVVKESNNFHMLGNNQGQFLEFHKAYSSPTHSRVNIAPFKFDVPSPDDLVSNGLHSSEQ
HAKAKIFDFKSSRAPSSRLGKNEAVKELSSAKRSDSSHDSTGKDKHNGIVFSKNLEINTS
SGFKASDKSSASMAKGRVEDSDGRSVSINMCSSGQSSSSLMPKERTDMVEDGSSLTHGGE
GHNLTSNLKNMTLAAKSGNSKDIKANSRAQYKPEKWMLPEKAEDSLTQLNLAIVGHVDSG
KSTLSGRLLHLLGRISQKEMHKYEKESKLQGKGSFAYAWALDESAEERERGVTMTVAVTY
LDSKRYHVVVLDSPGHKDFVPNMITGATQADAAILVIDASIGSFEAGMDGTKGQTREHAQ
LIRSFGVDQIIVAVNKMDAVEYSKDRFDLIKSQLGTFLRSCDFKDSSVTWIPLSAVENQN
LVVAPSDVRLSWYHGPYLLDAIDSFQPSSRDFSKPLLMPICDVIKSSQGQVSACGKLEAG
AVRSGSKVLVMPSVDIAIVRSLERDSQTCSIARAGDNVAINLHGIDGNHVIAGGVLCHPD
FPVAFAKHLELKVLVLDGATPILMGSQLEFYAHHAKEAARVARISSLLDSKTGKVTKKAP
RCIVAKQSAVIELVLQEPVCIEMFSKCKALGRVFLRTLGRTVAVGVVTRIVEELV
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaaaagttaattatggaattgattatgatgatggttatgatgatgattatgat
gactacgactatggatatgatgtagaagaaaatatgaaagaaccttctctacaagacacc
atcaaacgtggtgtgtggcgttgctccgtttgtacttacgataatgatgataccatgtca
tcatgtgatatttgtggcattcttcgcagtccgtcagtcagaaacggcacctatgatgag
aagagaacagttcatggcatatgcaaagtttctggagtatctattatggccaagtctctt
ttcgcatcaaggccgcatcagatgtccaaaaaagaagtagattctcaacaacagaatgat
gattttgtggtgaaagagagcaataacttccacatgcttgggaataaccaaggacaattt
cttgaatttcataaggcttatagttctcctacccattctcgtgttaatatagcccctttt
aagtttgatgttccatctccagatgacttggtctccaatggtctgcattcatctgaacag
catgcaaaagccaagatttttgactttaaatcttccagagctccctctagtaggcttggg
aagaatgaggcagtcaaagaactatcaagtgctaaaaggtcagatagctcacatgactca
acaggaaaagacaagcacaatggaattgtcttctcaaagaatctagaaatcaacacatca
tcaggtttcaaagcttcagataaatcttctgcttcaatggcaaaaggcagagttgaagat
tcagatggaagaagtgtttctattaatatgtgttctagtggtcaaagctcatcatcactg
atgccaaaagaaagaactgatatggtggaagacggaagctctttaacgcatggaggtgag
ggacataatctcactagtaatctgaaaaacatgactttggctgctaaatctgggaactca
aaagatataaaagcaaattcacgtgcacagtataagcctgaaaagtggatgctccctgaa
aaagcagaagattcactgactcaactaaatcttgcaattgttgggcatgttgattctgga
aaatcaacactctctggtagactgcttcaccttttgggacgaatatcccaaaaagaaatg
cacaaatatgaaaaggagtccaaattgcagggaaaaggatcctttgcttatgcttgggca
ttggatgagagtgcggaagaaagggaaaggggagtcaccatgactgtggctgtaacttat
ttggattcaaaaagatatcatgttgttgtccttgactccccagggcacaaagattttgtt
ccaaatatgataactggggcaacacaagctgatgctgcaattcttgttatagatgcctct
attggttcatttgaagctggtatggatggcacaaagggacagacaagggaacatgcacaa
ctcatcagaagttttggtgtcgatcaaattatagttgcagttaacaagatggatgctgta
gagtactctaaggatcgatttgatttgataaaatcacagcttgggacatttctccgctct
tgtgactttaaggattcctcagtcacatggattccgctaagtgctgttgagaatcagaat
ttagtagttgcaccttctgatgttcgtctatcctggtatcatggaccttatctattagat
gcaattgattccttccagccttctagtagagatttttcaaagcccctacttatgcctata
tgtgatgttataaaatcttcacaagggcaggtgtctgcctgtggcaagttagaggctgga
gctgttcgaagtggatcaaaggttttagtcatgccatctgtagatatagcaatcgtgcgt
tccttagagcgtgattcccaaacttgttcaattgcaagagccggagataatgtagctatc
aacctgcacgggatagatggaaatcatgtgatagctggcggtgtgttatgtcatcctgat
tttccagttgcatttgcaaaacatttggagttgaaggtgcttgttctggatggtgcaaca
ccaattttaatgggttctcagttggagttttatgcgcaccatgcaaaagaagctgcaaga
gttgcaaggatatcatcgttgcttgattcaaagactgggaaagtcacaaagaaagcacct
cgttgtattgttgctaagcagagtgcagttattgagttggttttgcaggaaccagtttgc
attgaaatgttctcgaaatgtaaagccctcggaagggtgtttcttagaacattaggaaga
acagttgctgtgggggtcgtgacacgaatagttgaggagctggtatag
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