Gossypium arboreum (tree cotton): 108473642
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Entry
108473642 CDS
T05776
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108473642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108473642
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108473642
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108473642
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
108473642
NCBI-ProteinID:
XP_017630809
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All DBs
Position
11:complement(137134735..137135909)
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AA seq
277 aa
AA seq
DB search
MSNKPRELVVIRSVWSENLDSEFEIIRSIIDVFPIISMDTEFPGVVVRSDGTGGGHRSRR
IDATENYQSLKANVDILKLIQIGLTLSDADGNLPNLGTENRFIWEFNFKDFDVGNDVHAP
DSVELLRRQGIDFEKNLELGIELVRFAELMMSSGLVLNDAVTWVTFHCAYDFGYLVKCLT
GGLLPDQLTEFLELVRVFFGDRIYDVKHLMKFCAGLHGGLDRASTDLGVKRAIGKSHQAG
SDSLLTLHAWLKIKERYFVNGDPIEKYANVLYGLEVD
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaataaaccgcgagagttagtcgtgatccgatccgtttggtcggaaaatttggat
tccgaattcgagataatcagatccataatcgacgttttcccgatcatttcaatggacaca
gagtttccgggcgttgtcgtccgatcggacggcaccggcggcggccatcgctcccgtcga
attgacgccactgagaattaccaaagcctcaaagcgaatgttgacatactaaagcttatc
caaatcggcctcacgttatcagacgctgacgggaatttaccaaatctcggcaccgagaac
cggttcatttgggagttcaatttcaaggatttcgatgtggggaatgatgtacatgcgcct
gattccgtcgagcttctccgtcgccaaggcatagatttcgagaagaacctggaacttggg
atcgagttggtccggttcgctgaactgatgatgtcatcgggactcgtattgaacgacgcc
gttacgtgggtgactttccactgcgcgtatgattttggatacctcgtgaaatgcttaacc
ggtgggttattgcctgaccaactcactgagtttttggaactcgtgcgagtgttctttgga
gacagaatctacgacgtcaaacacttgatgaaattctgcgctggattacacggagggctg
gatcgtgcgtctacagatttgggagtaaagcgtgcaattgggaagagtcatcaagctggt
tccgatagtttattgacattgcacgcttggttgaagataaaggaaaggtattttgtaaat
ggggacccaattgaaaagtatgctaatgttctttatggtttagaagttgactaa
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