Gossypium arboreum (tree cotton): 108473793
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Entry
108473793 CDS
T05776
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108473793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108473793
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108473793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
ATG17_like
DUF6306
COG3_N
SGT1
FapA
DUF1664
Prefoldin_2
Motif
Other DBs
NCBI-GeneID:
108473793
NCBI-ProteinID:
XP_017631038
LinkDB
All DBs
Position
11:complement(17083669..17090132)
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AA seq
789 aa
AA seq
DB search
MANNPFNPSGGFGTSSSLFGASSGSSLFSSSSATSPFSFASSSSSASTATTVTTPSFSGL
FSSSSASNSATTSPFGAAGFPFSVGSPFSSSSGSSNTTAASTAAASTSSSTSGFSFAPSS
SFGFGNPASSSSPASVFSEKVGTSSSPFGASSGSTLFSSSPAATSSSFGSSSSSSAAAPA
PAPSFSSFMSSSSASNSTTTSPFSYSTGFSFLGGSSFGKSTESSTTTATFTKAPSLTAAS
SSSSSSSSGFSFSLPSSASQPTFGYGNAASSSSSSSASTVPGTFGTSSSPFGASSGSPLF
SSSQAPATTTTTTAAMSSFGSLSSPSTATATTPSFPSLSSSSSASSTGFSFGGSSPFLKS
TASSTPASTSSTAPSLAAASSSSSSSFSFASPSASQPAYGFGNATSASTPAPTLSGSAVS
KPASLSFGTSSAPLFSTVTTTTASTPAASTTTASTPAFPAFNLSSSSSSATASSAAPASS
AVTSAAVSSLTGFGVTNAAAASGSSGSFSGFSLSTKPSTPASSSQAQSIASAPVFSLTAS
GSSASTTSTSISTSVQTSSALVVASSSGTSSSATAAVSTTPKLPSEITGKTVEEIIKEWN
AELQERTGKFRKQASAIAEWDRRILQNRDVLLRLEIEVAKVVETQASLERQLELIETHQQ
EVDKALQSMEEEAERIYKDEHGLLLDDEAASTRDAMYEQAENVERELEHMTEQIKSIIET
VNSSQGGELEALDGMTPLDLVVKILNNQLTSLMWIDEKAEEFSGRIRKLAAQGNAADGEL
MAAPKYWMS
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatcccttcaatccttcgggagggtttgggacatcttcatccctatttgga
gccagcagtggttcttctctattttcatcttcatctgctactagcccttttagttttgca
tcttcgtcttcatcagcttctactgctactactgttacaactccatcgttttcaggcttg
ttttcgtcaagttcagcttcgaattcagccactacatcgcctttcggtgctgctgggttc
cctttctcagttggttcgccattttcttcaagcagcggtagttcgaatacaacagcagcc
tctactgcagcagcttctacttcttctagcacttcaggcttctcttttgctccatcttct
tcctttggatttggcaatccagcttcatcatcatctccggcatccgtattctctgaaaag
gtcgggacatcatcttccccgtttggtgccagcagtggttcaactttattttcatcttca
cctgcagctacttcaagctcttttggttcttcgtcttcatcttcagcggcagccccagcc
ccagccccatctttttcaagcttcatgtcttcgagctcagcttcaaattctaccaccact
tcacctttctcatattctacagggttctccttcctgggtggttcatcttttggaaagagc
actgaaagttcgactacaacagcaacctttactaaagcaccttcgttaacagctgcttct
tcttcttcttcttcaagttcttcaggcttctctttttccctcccttcttcagcctctcaa
cctacatttggttatggcaatgcagcttcatcttcgtcgtcatcatcagcatccacagtc
cctgggacatttgggacatcttcatccccatttggagccagtagtggttcccctctattt
tcatcttcacaagcaccggctaccactactaccactactgctgctatgagctcttttggt
tctttatcttcaccttctactgctacagctactactccatcttttccaagcttatcatca
tcgagctcagcttcttctacgggattctcttttgggggtagttcaccatttttgaagagc
actgctagttcaacaccagcatccacctcttctacagcaccttctttagcagctgcttct
tcgtcaagctcttcaagcttctcatttgcctcgccttcagcctctcaaccagcatatgga
tttggcaatgcaacttcagcatcaacacctgcacccacattgtctggctctgctgtgtca
aaacccgcttccttgtcttttggaacatcatcagcgccattgttttcgactgttactacc
acaactgcttctacccctgcagctagtactactactgcttcaactccagcattcccagcc
tttaacttaagttcttcgtcttcttctgctacagcttcatcagctgcacctgctagttca
gctgttacatcagctgctgtgagttctttgactggatttggtgtgacaaatgcagccgct
gcatctgggagttctggttctttctctggcttttctttatcaacaaaaccatccactcct
gcttcatcctcacaagcacaatccattgccagtgctcctgtattcagtctcactgcttcc
ggttcttctgcttcaactacttcaacttccattagtacttctgtccaaacatcatcggca
cttgttgtagcttcaagtagtgggacgagttcaagtgctactgctgcagtatctaccacc
ccaaaattaccttcggagataaccggaaagacagtggaggagatcatcaaggaatggaat
gctgaactgcaagaacgcactggaaaatttcgaaagcaggctagtgcaattgctgagtgg
gataggcgaatcttgcagaatcgtgatgttcttcttaggcttgagattgaagtggcaaaa
gtggttgagacccaagctagcttggagcgacaactggagttaattgagactcaccaacaa
gaggttgataaggctttgcaaagtatggaagaagaagcagaacgaatttataaagatgag
catggattgcttcttgatgatgaagctgcgtcaacaagagatgcaatgtatgagcaggca
gaaaatgtggagagggaactggagcatatgacggaacagatcaagtcgattattgagaca
gtaaactctagtcagggtggggaacttgaggcacttgacggaatgactcccctagatttg
gtggtcaagatcttgaataatcaactaacttctttaatgtggatcgatgagaaggctgag
gaattctctggtcgtattcggaagctcgcagcccagggtaatgctgcagatggagaatta
atggctgctccaaaatattggatgtcctga
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