Gossypium arboreum (tree cotton): 108473865
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Entry
108473865 CDS
T05776
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gab03036
]
108473865
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108473865
microRNA pathway
RISC loading complex
108473865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
DND1_DSRM
dsrm
PAZ
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108473865
NCBI-ProteinID:
XP_017631148
LinkDB
All DBs
Position
5:3280287..3293996
Genome browser
AA seq
1651 aa
AA seq
DB search
MPDGELSTDGTELSMASKVKAFSTPSPIVEISRKDEPIMEKKEKDPRKIARKYQLELCKK
AMEENIIVYLETGCGKTHIAVLLIYELGHLIRKPQNRVCIFLAPTVALVQQQARVIEDSL
DFKVGTYCGNCRHLKNHHDWEIEIKEYEVLVMTPQILLRSLYHCFIRMDLIALLIFDECH
HAQIKSNHPYAEIMKVFYDKATASMLPRIFGMTASPVVGKDASSQVNLPKSINSLENLLD
AKVYSVGDKEELESFVASPVVRVYDYGPVNFGSSCSTMIYCSKLEEIKRQCIPLVRKNGD
IQSARNTKKLLNRMHDNIIFCLENLGIWGALQACRLLLTGNNSERNELIEDEGILSDDSV
CDRYLVHAADVFASDCTRDGSANDLSDVEILKEPFFSKKLLRLVGILSTFRLQPNMKCII
FVNRIVTARSLSYILQNLKFLLFWKCHFLVGVHSGLKSMSRKTMKNILEKFRTGELNLLI
ATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPLSEYAFLVNSGNEKELDLIKN
FKKDEDRMNVEISFRTSTEVSIGLEERIYTVDSSGASISSGYSISLLHHYCSKLPHDEYF
FPKPSFYYFEDSGGTICNIILPSNAPINQIASTPQSSVNAAKKDACLKAIEELHKLGALT
DHLLPLQNSVLEEETLLVSSDSGSSEADEDSRGELHEMLVPAVLKESWTNLENCVLLYAY
YIKFIPNPEDRSYKEFALFVKSPLPKEAERMELDLHLSRRRSVMTKLTPSGVAEFKREEI
MQAQHFQEMFFKVILDRSELLSEFVTLGNVFLSSSSSTFYLLLPVILSNCENKVTVDWGI
VQRCLSSPLFKPPVAAAKIENFPSDVCLHLVNGCRSIRDIENSLVYATHKRAFYFITSIV
GEKNGYSPYRDSGTLNHLEHLNMSGIHLKYPEQPLLHAKPLFKLHNLLHNRKPEDSESNE
LEEYFIDLPPELCQLKIIGFSKEIGSSLSLLPSIMHRLENLLVAIELKHVFSASFAEGAE
VTALRVLEALTTEKCQERFSLERLESLGDSFLKFAVARHLFLLHDALDEGELTRRRSNVV
NNSNLFKLATRRNLQVYIRDQPFDPYQFFPLGHPCPVICTKETKGTVHPQSSCQVDHAKS
EVRCSRNHHWLQKKTISDVVEALVGAFIVDRGFQAATAFLRWIGIRVDFQGSQLNSICAA
SKRFMPLSSLLDIGDLENLLGYQFLHKGLLLQAIVHPSFNRHGGGCYQRLEFLGDAVLDY
LITSYLFSLYPKLKPGQLTDLRSVSVNNKSFANVAVDRRLHKFLMCDSCHLNEAIEKYVD
FITSSPDRGLFEGPKCPKALGDLVESCFGAILLDTGFNLNRVWKIMLSILDPIKSLSSVQ
LNPIREVQELSQCYNWDLQFLVAKVGRNFSVDAKVNAGDVPLCVCSSNINRKEAIRTTAH
QLYVKLKALGYAPKSKSLDEVLKGSPKNEAKLIGYDETPIDVTVPDIIGFENMKLQESLV
NDFNPKTRSSKKTTSSGVSCISPGSRPFEVKAARGSASGIEPKGTPPNCSIVDPSCGIDS
PSKGESHSRTARSQLYEICTINCWKPPLFECCKEEGPSHLRSFTYRVIVEIEEAPDMILE
CFSSPRTTKKAAAEHAAEGALWYLKHEGYLQ
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atgccggacggcgaattgtccaccgacgggaccgagctgtccatggcctctaaagttaaa
gccttttctactccgtcgccgatcgttgaaatcagccgaaaagatgaacctataatggaa
aagaaagagaaggatccacgaaaaattgctagaaagtatcaactggagttatgcaagaaa
gccatggaagagaacataattgtttatttggagactggttgtgggaagacccacattgca
gttctgcttatttatgagcttggccatttgatacggaaacctcagaatagggtatgcatt
tttcttgctcccacagtggctcttgttcagcagcaagctcgggttatagaagattctctt
gatttcaaggttgggacttattgtggtaactgcagacacttgaagaaccatcatgactgg
gaaatagagatcaaagaatacgaggttcttgttatgactccccaaatactacttcgtagc
ttgtatcactgcttcatcaggatggacttaatcgctcttctgatatttgatgagtgtcat
catgctcaaattaaaagcaaccatccttatgcagaaatcatgaaagttttttatgataaa
gctactgcatcaatgcttcctcgtatatttggaatgacagcgtctcccgttgttggtaaa
gatgcttccagtcaagtaaatttacctaaaagcatcaacagcctcgaaaacttgcttgat
gctaaggtatattcagttggagataaggaggaattggaaagctttgtagcatctcctgtg
gttagagtatatgattatggtcctgtcaattttggttcttcttgttccaccatgatctat
tgtagtaaacttgaggagattaagcgccagtgcatacctcttgtcaggaagaatggtgat
attcaatctgccaggaacacaaaaaagctgctcaacagaatgcatgataatataatcttt
tgcttggaaaatctgggcatttggggagcattgcaagcttgccgacttcttttaactggt
aataactctgagaggaatgaattgatagaagatgaagggattttaagtgacgactctgta
tgtgatcgatatcttgttcatgctgctgatgtttttgcttcagattgtacgagagatgga
tctgcaaacgatttatctgatgtagagattttgaaggaaccatttttctcgaaaaagctg
ctacgtcttgttggaattctttccaccttcaggttacagccaaatatgaaatgcataatt
tttgtgaataggattgttactgcaagatccttgtcatacatactgcaaaaccttaagttc
ctattattttggaagtgccattttcttgtgggagtccactctggacttaaaagtatgtca
aggaagacaatgaaaaacattcttgagaagttcagaacaggagagttgaatcttttgatt
gcaactaaagtcggtgaagaaggacttgacattcagacatgctgccttgtgatacgtttt
gaccttccagaaactgttgcgagctttatccaatcaagaggacgtgcaagaatgcctctc
tctgagtatgcatttctggtgaacagtgggaacgagaaggaactagatttgattaaaaat
tttaagaaagatgaagatcgtatgaatgtggaaatttctttcagaacatctactgaggtt
tctattggtcttgaggagagaatctatacggttgattcatctggtgcttccatcagttca
ggatatagtatctctctacttcatcattactgctcaaaactgccccatgatgagtacttt
ttccccaagccaagcttttattattttgaagattcaggaggaacaatctgcaatataata
ttaccttctaatgctccaataaatcaaattgccagtacacctcaatcttcagttaatgct
gccaaaaaggatgcttgtctaaaagcaattgaagaattgcataaattgggagccttgact
gaccatctcttgccactgcaaaacagtgttcttgaggaggaaacattgctggtgtcttct
gattctgggagctctgaagcagatgaggattcacgaggtgaactacatgaaatgcttgtt
cctgctgtgcttaaagaatcatggactaacttagagaactgtgtcctcctttatgcttac
tatataaaatttattccgaatcctgaggacaggagctataaagagtttgctctctttgtc
aagtctcctctccctaaggaggctgagagaatggagctggatcttcacctatctcgccgt
aggtcggtgatgacaaagcttaccccatcaggagttgcagaatttaagagagaagagatc
atgcaggcacagcattttcaagaaatgttcttcaaggtcatccttgatagatcagaactc
ctttctgaatttgttactttaggaaatgtctttctttcatcaagctcctcaacattctat
ttactgcttcctgttattctctccaattgtgagaataaagtgacagtggattgggggatt
gtgcaaagatgtttgtcgtctccactttttaagcctcctgttgcagctgcaaagattgaa
aatttcccttcagatgtttgcttgcaccttgtaaatggttgtaggagtataagagacatt
gagaatagtttggtgtatgccacacacaagagggccttttactttattactagcatcgtt
ggtgaaaaaaatggttacagcccatatagagattcaggcactttaaatcacttggagcac
ttaaacatgtctggcattcatcttaagtaccctgaacaacctcttctgcatgcaaaacct
ctttttaagttgcacaatttactccacaaccgaaagccggaagattcagaatcaaatgaa
ctggaagaatacttcattgatttgcctcctgagctttgtcagctgaaaataataggcttc
tccaaagagatagggagttcgctttctttgttaccatcaattatgcatcgcctggagaac
ttgcttgtggctattgaactgaagcatgttttttctgcttcatttgccgagggagctgaa
gttacagcccttagggttctagaagctcttactacagagaagtgtcaagagcgtttttct
cttgaaaggcttgaatcacttggtgattccttcctcaagtttgctgtggcccgccatctt
tttcttttacatgatgcactcgatgaaggggaattgactaggagaaggtcaaatgttgta
aataattctaatttattcaagctggcaacaaggcgaaatttacaggtttacatacgtgat
caaccttttgatccttatcagttctttcccttgggccatccctgcccagtaatttgtaca
aaagaaactaaaggaactgttcatccacaatctagttgtcaagtagatcatgcaaagagt
gaagtcagatgtagtagaaatcaccattggctacaaaagaaaacaatttctgatgtggtt
gaggctcttgtaggagcatttatagttgataggggcttccaagcggcaacagcatttctt
agatggataggcatacgagtggacttccaaggttctcaacttaatagtatttgcgctgca
agcaagagatttatgccactttcctccctattggatattggagatcttgaaaatttattg
ggttatcagtttcttcataagggtctcctccttcaggcgattgtgcatccttcttttaat
aggcatggtggaggctgctaccagagattggagtttcttggagatgctgtcttggattat
ttaattacatcatatctgttttcactgtatccaaagttgaaacctggtcagttgactgat
ttgagatcagtgtcagtgaacaacaagtcctttgccaatgttgcagtggacagacgctta
cacaaatttcttatgtgtgactcttgtcacctcaacgaggccatagaaaaatatgttgac
ttcatcacatcatcaccagacaggggattatttgaagggccaaaatgtccgaaggctctt
ggtgacttggtagagtcttgttttggtgctattctccttgatacagggttcaacttgaac
cgtgtttggaagataatgttatccattctggatccaatcaagagcctttcaagtgtgcag
ctcaatcctatcagggaagtacaggaactttcccagtgttataactgggatttgcagttt
ctagttgcaaaagttggtagaaatttttcagtggatgcaaaggtaaatgcaggagatgtt
cctctatgtgtttgttccagcaacatcaatagaaaagaagctatcagaactactgcacat
caactatatgtaaagttaaaggctctaggatatgcacccaaatcaaagtccttggacgaa
gttttgaagggaagccccaagaatgaagccaagcttattggatacgatgaaacacccatt
gatgtcactgttcctgacataattggatttgaaaacatgaaattgcaagaatctcttgtg
aatgatttcaaccccaaaacccgttctagtaaaaagacaacttctagcggtgtatcttgc
atctcgcctggtagcagaccttttgaagtaaaagcagcaaggggttcagcctctggtatt
gaacccaaaggcacaccccccaattgctccattgtggatcctagttgtgggattgactcg
ccatccaaaggtgaatcacatagtcgtactgctagatcacagttatacgaaatctgtact
atcaattgctggaaaccccctttgtttgaatgttgcaaagaggaaggaccaagtcatttg
agatcattcacttacagggtaatagttgaaatcgaagaagctccagatatgatattggag
tgcttcagcagtcctcggaccacaaagaaggcagcagccgagcatgcagcggaaggtgcg
ctctggtatttaaaacatgaaggatacttacaataa
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