Gossypium arboreum (tree cotton): 108473881
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Entry
108473881 CDS
T05776
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04120
Ubiquitin mediated proteolysis
gab04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108473881
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108473881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gab04121
]
108473881
Enzymes [BR:
gab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108473881
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108473881
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108473881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
zf-C3HC4_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_EML
zf-C3HC4
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
WD40_RFWD3
WD40_like
zf-C3HC4_3
zf-RING_2
Beta-prop_WDR75_1st
zf-C3HC4_4
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
U-box
zf-RING_UBOX
eIF2A
zf-RING_5
YbfN
Beta-prop_SCAP
zf-RING_10
DUF1664
YpoC
Beta-prop_IFT122_2nd
zf-RING_6
Baculo_p24
Motif
Other DBs
NCBI-GeneID:
108473881
NCBI-ProteinID:
XP_017631167
UniProt:
A0A0B0MV48
LinkDB
All DBs
Position
11:19953903..19962887
Genome browser
AA seq
674 aa
AA seq
DB search
MEEFSTGTDPRVPAVKPDSKPSSFEGVPLEAASAAVSEDAEVDKDLLCPICMQIIKDAFL
TSCGHSFCYMCIITHLRNKSDCPCCSQFLTNNQLFPNILLDKLLKKTSARQISKTASPVE
QFRQALQQGYEVTIKELDSLLSLLAEKKRKMEQEEAERNMKILLDFLHCLRKQKVDELNE
VQTDLQFIKEDINSVERHRMDLYRARDRYSVKLRMLGDDSSTRKPWSSSMDKNNSGIVSS
SLNIRGGMPAGNLQNKKIDGKTQLSGHGSQRKDALSGADSQGFNQSGLSVARKKRIHAQF
NDLQECYLQKRRQLANQLHIKQEGDKNVIHREGYNAGLADFQSVLSTFTQYSRLRVIAEV
RLGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDLSMVLNEPADVHCPVVEMSTRSK
LSCLSWNKHWKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTDPSMLVSG
SDDCKVKVWCTKQEASVINIDMKANICCVKYNPGSSDFIAVGSADHHIHYYDLRNISSPL
HVFSGHKKAVSYVKFLSENELASASTDSTLRLWDVKENLPLRTFKGHTNEKNFVGLTVNS
EYIACGSETNEVYVYHKEISKPVTWHRFGSQEMEDADEDGGGSHFISAVCWKSDSPTMLT
ANSQGTIKVLVLAA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaagaattctcaactggtaccgaccctcgtgtgccggcggtcaagccggactctaag
ccatcttccttcgagggagttccactcgaagctgcctccgctgctgtttcagaagatgcc
gaggtggataaggacttgctgtgtccgatttgtatgcagataattaaggacgccttcctc
acgtcttgcggtcacagcttttgctacatgtgtataattacccatcttcgaaacaagagc
gattgcccttgttgctctcaatttctcactaataatcagcttttccccaatattttgctc
gataagcttttgaagaagacttcagctcgtcaaatatcaaaaactgcatcccctgtggaa
cagtttcgtcaggcgttacagcagggttatgaggttacaatcaaggagctggacagcctt
ttgtccctccttgcagagaagaagagaaaaatggaacaggaagaagctgagagaaatatg
aaaatactgctggatttcttacactgcttaaggaagcaaaaagttgatgaactaaatgag
gtacaaactgatcttcagtttattaaagaggacataaattctgtggagagacatagaatg
gatttgtatcgtgcaagagatagatactctgtgaaattgcggatgcttggagatgactct
agcacaagaaagccatggtcttcatccatggacaagaacaatagtggaattgtctctagt
tctctaaatatcaggggagggatgcctgcagggaatcttcaaaacaagaaaatagatgga
aagacacagttgagtggccatggtagtcagagaaaagatgccttaagtggagcggactca
caagggttcaatcaatctggtctctctgttgcaagaaaaaagcggattcatgcccagttt
aatgacctacaagagtgttacctgcaaaagcgacgtcagttggcaaaccaactgcatatt
aagcaagaaggtgataaaaatgtcattcatagagagggttataatgcgggtcttgcagat
tttcagtctgtgctgagtacttttactcaatacagtcgactaagagtcattgctgaagtg
aggcttggagatctctttcattcagccaatatagtatcaagcatagaatttgaccgtgat
gatgagttgttcgctacagctggagtgtctcggcgcattaaggtttttgatctctcaatg
gtcctaaatgaaccagcggatgtacactgtcctgttgtggagatgtccacacgttctaaa
ctaagttgcttgagttggaacaagcattggaagaatcatatagctagtagtgattatgag
gggatagtaaccgtgtgggatgtaacaacacgtcagagtctaatggaatatgaagaacat
gaaaaacgagcatggagtgttgatttctcacggacagacccctcaatgcttgtatctggt
agtgatgattgcaaggtgaaagtttggtgcacaaagcaggaggccagtgttattaatatt
gacatgaaagcaaatatatgttgtgtcaagtataatcctggatctagcgatttcattgcg
gttggttcagcagatcatcacatccactattatgatttgagaaacatcagtagtccactt
catgtgttcagtgggcacaagaaagcagtctcatatgtgaaattcttgtctgaaaatgaa
cttgcttctgcatctacagatagcacactaaggttatgggatgtgaaggagaatttgccg
cttcgaacttttaaaggccatacaaatgagaagaatttcgtaggccttactgtaaacagt
gaatatattgcatgcggcagcgaaacaaatgaagtgtacgtgtaccacaaggaaatatcg
aaaccggtaacatggcatagatttggttcacaagagatggaggatgcagatgaagatggg
ggtggatcgcacttcataagtgcggtgtgttggaagagcgatagccctaccatgctaact
gctaacagtcagggaaccataaaagtgctagtccttgcggcttga
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