KEGG   Gossypium arboreum (tree cotton): 108473953
Entry
108473953         CDS       T05776                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03018  RNA degradation
gab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108473953
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108473953
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108473953
   03041 Spliceosome [BR:gab03041]
    108473953
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108473953
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108473953
Spliceosome [BR:gab03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108473953
 Complex C
  U2 snRNP components
    108473953
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 108473953
NCBI-ProteinID: XP_017631279
UniProt: A0A0B0PKE4
LinkDB
Position
11:13440965..13443306
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttttcgtatttcaaggacttagtgggaagagaagtgacggtggagctgaag
aatgatttagcaattagaggaactcttcactccgttgatcaatatctcaacatcaagctc
gagaatactagggttgtcgatcaagacaagtatcctcacatgctttcagtgaggaactgt
ttcataaggggttcggttgtgaggtacgtccagctacctcccgagggagtcgacattgaa
ttgcttcatgatgccacaagaagagaagctcggggaggctga

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