Gossypium arboreum (tree cotton): 108473953
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Entry
108473953 CDS
T05776
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108473953
09123 Folding, sorting and degradation
03018 RNA degradation
108473953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108473953
03041 Spliceosome [BR:
gab03041
]
108473953
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108473953
mRNA degradation factors
5'-3' decay
Lsm complex
108473953
Spliceosome [BR:
gab03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108473953
Complex C
U2 snRNP components
108473953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
DUF1256
Motif
Other DBs
NCBI-GeneID:
108473953
NCBI-ProteinID:
XP_017631279
UniProt:
A0A0B0PKE4
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All DBs
Position
11:13440965..13443306
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttttttcgtatttcaaggacttagtgggaagagaagtgacggtggagctgaag
aatgatttagcaattagaggaactcttcactccgttgatcaatatctcaacatcaagctc
gagaatactagggttgtcgatcaagacaagtatcctcacatgctttcagtgaggaactgt
ttcataaggggttcggttgtgaggtacgtccagctacctcccgagggagtcgacattgaa
ttgcttcatgatgccacaagaagagaagctcggggaggctga
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