Gossypium arboreum (tree cotton): 108474008
Help
Entry
108474008 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108474008 isoform X1
KO
K14544
U3 small nucleolar RNA-associated protein 22
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108474008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gab03009
]
108474008
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108474008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nrap_D5
Nrap_D3
Nrap
Nrap_D4
Nrap_D2
Nrap_D6
Motif
Other DBs
NCBI-GeneID:
108474008
NCBI-ProteinID:
XP_052877858
LinkDB
All DBs
Position
11:27332301..27339395
Genome browser
AA seq
1049 aa
AA seq
DB search
METETCIDSMDFKVQELLKEARLECSSALTKLVDDTVSAIKSAIDKIPEDLQVTADWAPG
FVRDIGADKAEFKFKKPKSIEIGGSYSIGCIAKPDVNVDLLLRLPKECFHEKDYLNYRYH
AKRCLYLCVIKKHLKSSSSIQKVEWSALQNEARKPVLVVYPAANLGEVPGLFIRIIPTAT
SLFDLSKLNMKRNNVRALNAGDDPQPTPIYNCSILEDMYLEEKSNFVKKTFSGWKELGEA
LILLKVWARLRSSIYVHDCLNGFLISIIVSYLVAKNKINRDMMPMGIFRATLKFIETDPL
WKHGLYFPMSDQNASSKGNEQLNSSTRFNLAFRISSVAYPELQDEVALTLRCLEKCRDGG
FEEIFTTKIDNAAKYDYCVRLNLKGNSEVYSLGFCLDEECWRVYEQDVHSLLNQGLTDRA
KFIRVIWRNTYSDFNVENGLSALDSEPLFVGISVSSVEKAFRVVDIGPNAEKKDEALMFR
KFWGEKAELRRFQDGKIAESTVWESKQGTRHLILKGIIEFLLGRHLSLSKKDIVPVVDQL
DFCLLHDGKDPVSHSVKLLGTFEALSKRLRSIEDVPLKISSVQPLDSAFRFTSVFPPEPH
PLANKKVDVARLHNLTPFCVQSLEVMIQLEGSGSWPMDDVLIEKTKSVFLLKIAESLQDN
WGITCTATEEDVDVFMDGYAFRLRILHERGLSLVNKEIGGDQMKRVSSADKMLFVRSQHA
SMINGLQFRYPIFGPVVRLAKRWLASHLFSACLAEEAAELLVAYLFLKPLPFNVPCSRIT
GFLRFLRLLAEHDWAFSPLVVDINGDLSENDEKEIDDNFTQSRKAYEENPQNESKAMFLA
TAYDKASEAWTRCSPNPLELKRLAAYARSSASLLTKLILQNQTDSGGWECLLRTPLSLYD
AVILLHGDRLPYPKRLLFTSELDQGIFLGGKGRHVAHGNASTCFHPFLLPSDMKGSSLEQ
LKTKLMVNFDPLRCFVGDVEKGFSNRLKLWYDSLGGDAIGLTWERSKKREREAEETAEKY
PVDLLRNIGELGEGFVRDVYLLKAPKLSS
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggagactgaaacttgcattgactctatggacttcaaagttcaagagttattaaaggag
gctcgtctcgaatgttcgtctgcacttaccaagctcgtcgacgacaccgtttccgccatc
aaatccgccatagataaaattcctgaagaccttcaggttaccgcggattgggctccaggt
tttgtgagagatattggtgcagacaaagccgaatttaaatttaagaagccgaagtctatt
gaaattggtggtagttattcaataggctgcatagcaaaaccagatgttaatgtcgatctt
ctcctccgcttaccaaaggaatgtttccacgagaaagactacctaaattaccggtatcat
gctaaaaggtgcctttacctctgtgttataaagaagcacttgaaatcctcttcatcaatt
cagaaggttgaatggtctgctttgcaaaacgaggctaggaaacctgtattggttgtctat
ccagctgcaaaccttggtgaagttcctgggctttttatcagaataattcccacagcaaca
tccctattcgatctttccaagttgaacatgaagcggaacaatgtacgagctctgaatgca
ggggatgatcctcagcctacaccaatatataattgtagcatattggaagacatgtattta
gaggagaagtcaaattttgttaagaaaacattttctggatggaaggaattgggagaggcc
ttaatcttgctgaaggtctgggctcggttgagaagttcgatatatgttcatgattgctta
aatgggtttctaatatctattatagtgtcgtaccttgtggccaaaaataagattaaccgt
gatatgatgccaatggggatatttcgtgccacattgaaatttattgaaactgatccattg
tggaagcatgggctttactttccaatgtcagaccagaatgcttcttctaagggaaatgag
cagcttaattcttcaacccgcttcaatttggcattcagaatatcaagtgttgcttatccc
gagctacaagatgaagttgcgttgacacttaggtgtttagaaaaatgcagagatggtgga
ttcgaggaaattttcacaaccaagattgacaatgccgctaaatacgattattgcgttaga
ttgaacttgaaaggaaatagtgaggtttattctctgggattttgcttggatgaggaatgt
tggagagtgtatgagcaggatgtacacagtctgcttaatcaaggattgactgatagagcg
aagtttattcgtgttatttggaggaacacttattcggactttaatgttgaaaatggctta
tcagcacttgatagtgagccattatttgttggaatttcagtgagctctgtagagaaggct
tttagggttgtagatattggcccaaatgctgaaaagaaagacgaggctctcatgtttcga
aaattttggggtgagaaggctgagcttcggagatttcaagatggtaaaattgcagaaagc
acagtatgggagagcaaacaggggacaagacatctcattttaaaaggaattattgaattt
ttactgggacgccatctttctttatcgaaaaaggatattgtcccagtagtggatcagctt
gatttctgtttgctacatgatggtaaagacccggtatcacattctgtaaaactgcttgga
acttttgaagcattgtctaaacgattgcgttccattgaagatgttcccttgaagatatct
agtgtgcagcctcttgattctgctttcaggtttacttctgtatttcctcctgaacctcat
cctctggcaaataaaaaggtggatgtggcaaggttacataatttgaccccattctgcgtt
cagtcacttgaagttatgattcagttggaaggttctgggagttggccaatggatgatgtc
ctaattgagaaaactaaatcagttttccttctgaaaattgcagaaagtcttcaggataac
tgggggataacatgtactgctactgaggaagatgtggatgttttcatggatggatatgca
tttcgtcttagaattttgcatgagagaggcctaagcctggtgaataaagaaattggaggt
gaccaaatgaagcgggtttcatctgctgataaaatgctttttgttcgtagtcaacatgca
agcatgataaatggattacagttccgttacccgatatttgggccggttgttaggcttgca
aaacggtggcttgcttcacatctcttttcagcttgcttggcagaagaggctgctgagcta
ttagttgcctacctctttttgaagcctctaccatttaatgttccctgttcgcggatcact
ggatttttaaggttcttgcggctactagctgaacatgattgggctttttctccattggtt
gttgatataaatggtgatctgagcgaaaatgatgagaaagagattgatgataactttacg
caaagtagaaaagcttacgaagaaaacccccaaaacgaaagcaaggccatgttcctggct
actgcttatgacaaggcatctgaagcttggactagatgctcaccaaatccattggagctc
aaaaggttggcggcttacgctcgaagcagtgcaagcttgttgacaaaactcatattgcaa
aatcagactgattccggtggatgggagtgccttctccgaactccactgagcctctatgat
gctgtaatacttctccatggagatagattaccttacccaaaacgtcttctcttcacatct
gaactggaccaaggtatattccttggaggcaaagggcggcatgtggctcatggcaatgct
agcacttgtttccaccccttcctattgccttccgatatgaagggtagtagcttagagcaa
cttaaaaccaagctaatggtaaactttgatccactaaggtgctttgttggagatgtagag
aaagggttctccaacagattgaagttatggtatgattcattaggaggtgatgctatcggt
ctaacatgggaacggtcaaagaaacgagaacgagaagcggaagaaacggccgaaaaatat
ccggttgatttgttgagaaatataggtgaactgggggaaggatttgtgagagatgtttat
ctgctcaaggctcccaagctttcgagttaa
DBGET
integrated database retrieval system
