Gossypium arboreum (tree cotton): 108474455
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Entry
108474455 CDS
T05776
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108474455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108474455
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108474455
Spliceosome [BR:
gab03041
]
Complex C
Other components
Step II factors
108474455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
AAA_30
ABC_tran
nSTAND3
AAA_16
SLFN-g3_helicase
NPHP3_N
AAA_14
Helicase_RecD
AAA_23
AAA_29
T2SSE
ATPase_2
FtsK_SpoIIIE
Sigma54_activ_2
G-alpha
DAP3
Sigma54_activat
SRP54
nSTAND1
NB-ARC
AAA_33
Motif
Other DBs
NCBI-GeneID:
108474455
NCBI-ProteinID:
XP_017631874
LinkDB
All DBs
Position
3:complement(21147448..21155466)
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AA seq
700 aa
AA seq
DB search
MANLPIVQFEKKIVETVDQNPVVVIIGETGSGKSTQLSQMLHRKGYTNSGIVSVTQPRRV
AAVSVSRRVAQELGVRLGEEVGYAIRFEDRTSERTQIKYLTDGVLLRESLSNPELNQYSV
IILDEAHERSLNTDILLGLMKRLVRRRASNLKVLITSATLDGEKVSKFFSDCPLLTVPGK
LFPVEIFYSKERPISYLESSLKTAMDIHVREPEGDILIFMTGQDDIEKLVSKLEDKVRSL
EEGSCMDAIILPLHGSLPPEMQVRAFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPATGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSRVYHDDFLDVTVPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSTESLEDALKQLYLIDAIDENGSITSIG
RTMAELPLEPSLSRTLIEANEYGCLSQALTVAAMLSAETNLLPGRSKNNEKKRKYPPLEL
PDGSGFGDHIQLLQIYECWDENDYDIGWCKDYDLQVRGMMFVKEVRKQLSQIMQKIAKGS
SDVRVNQNQKRRQSYRNLRKALSIGFASQLAERMRHHNGFRTLGFKPQLVQVHPSSVLKP
DDDGLYPNYVVYHELIATSRPYMRNVCAVERQWVIPILEKLDKLDVRKLSGGGLGHVEEI
TEGNKSDLLKKEAVIVTAPEEQESKIQAARERFLARKGKK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcttccaatcgtgcaattcgagaagaagatagtagaaacagtggaccaaaat
ccagtggtggtgatcataggagagaccggttcgggaaagagcacgcagctctctcagatg
ctccaccgcaaaggatacactaattccggaatcgtttccgtcactcagccccgtcgcgtc
gcagccgtatctgtttcgaggcgagttgcgcaggagcttggtgttcggcttggggaagaa
gtaggctatgctattcggtttgaagatagaacttccgaaagaacacaaatcaaatacctt
actgatggagtgcttcttcgagaaagtctgtcaaatccggaactgaatcagtattctgta
attattctggacgaggctcatgagaggagtttgaatacggatattttgctggggttgatg
aaacgcttggttagaagacgtgcatccaatttaaaagttctgatcacgtcagcaaccctt
gatggtgaaaaagtgtcaaagttcttttcagattgtcccttgttaactgtccctggaaaa
ttatttcctgtggaaatattctacagcaaggagcgacctataagctatcttgagtcttca
ctaaaaacagctatggatatacatgttcgggaaccagaaggtgacatcctaatattcatg
actggacaggatgatatagagaagttggtatcaaagctggaggataaagttcgaagtcta
gaggaaggctcctgcatggatgctatcattcttcctctccatggttcattgccacctgaa
atgcaggtgcgtgcattcagtcctccccctccaaactgtaggcgttttattgttgccaca
aacatagctgaaacttctttgacagttgatggtgttgtgtatgttattgattctggttac
gtgaagcaacggcaatataacccagcaactggaatgtattcccttgatgttgttcaaatt
agcaaggtacaagctaatcaacgtgctggacgagccggaagaacacgtcccgggaagtgt
taccgtttgtacccatccagggtttaccatgatgatttccttgatgtaacagttcctgaa
atacagcgatcttctcttgctggcagtgttctttatctaaagtcattggacctccctgat
attgatattctgaagtttgattttcttgaccccccttctaccgagtcattagaagatgct
ctaaagcaactatatctgattgatgccattgatgaaaatggatcgataactagtattggg
cgaacaatggccgagctcccattggaaccttcactttcgagaaccttaattgaggcaaat
gaatatggttgcttatcccaggctctgactgttgcagccatgttatcagccgaaacaaat
ttgcttcctggtcgaagcaagaataatgagaagaaaagaaaataccctcctttggaactt
cctgatggttctggttttggtgatcacatccagttgttacagatctatgaatgctgggat
gaaaatgattacgatattggttggtgcaaagattatgacttacaggtgcgaggaatgatg
tttgtcaaagaagttcgaaagcagttatcgcagataatgcagaagatagcaaaagggtcc
tcagatgtacgagtgaatcaaaatcagaaaagacgccagagttataggaatttgaggaag
gcattgtccattggctttgcaagtcagcttgctgagcggatgaggcatcataatggcttt
cgaacactgggttttaagccccaactagtgcaggtgcatccttcctctgtgctaaagcca
gatgatgatggattatatccaaattatgttgtctaccacgaacttattgctacctcacgc
ccatatatgcggaatgtgtgtgctgtagagcgtcaatgggtgataccaattttagagaaa
cttgacaaacttgatgtcaggaaattaagtggtggtggattgggtcatgtagaagagatt
actgagggaaacaagtcagacttgctgaagaaggaagctgtcattgttacagctccagaa
gagcaggaaagtaaaattcaggcagcaagggaacgttttcttgctcgcaagggaaagaaa
tga
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