Gossypium arboreum (tree cotton): 108475724
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Entry
108475724 CDS
T05776
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03022
Basal transcription factors
gab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108475724
09124 Replication and repair
03420 Nucleotide excision repair
108475724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108475724
03400 DNA repair and recombination proteins [BR:
gab03400
]
108475724
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108475724
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108475724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
108475724
NCBI-ProteinID:
XP_052886692
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All DBs
Position
7:83340180..83347625
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AA seq
597 aa
AA seq
DB search
MASTHVTKRAKYKTTIKDPGTPGTLRMTFEKILFVPHNPKSAGKLDVEFRYIKGQKHTKE
GSNKPPWLNLTNNQNGSFIFEFENYSDLQECRDFVGKVLAKGGEVSEKPTVAYPDEQLSA
AEMELRIKLLQEDSELQKLHKQFVLSGVLTETEFWATRKKLLDREASKKTKQRLGFKSAM
ISDIKPSTDGRTNKVTFNLTPEVILQIFAEKPAVHRAFLSYVPNKMSERTFWTKYFRAEY
LHSTKNSIAAAAEAAEDEELAVFLKQDDILASEARKKIRRVDPTLDMEADEGDDYTHLPD
HGILREGSKEMTESQNELYKRSLSQDINRHAAVVLEGRAVDVELEDTKAVAEALAQSKQK
SSNKGESDGDTSRERLDRLSRMTEIEDLQGPNTLPLAPLCIKDPRDYFDSQQANALRSSG
DALGEIKQIKCGLSTQEVYGSLRESISSIRAMGLKEPIVKPEVAHQVFDALTNSISNTKY
HIGKNPQESVLDRLPRKTKEELLHHWTSILELLKHFWASYPITTTYLYVKVNRLKDAMSN
IYPQLEEIKGSVPSELRHQVSLLVRPMHQALDAAIQHYEASMQKRSAQSGERPNGYV
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcactcacgtgactaagcgagctaagtataagaccacaatcaaggatccagga
actcccggtactcttagaatgacgtttgagaaaattttatttgtgcctcataatcctaaa
tcagctggaaagcttgatgtggagtttcgatacattaaaggccaaaagcatacgaaggaa
ggatcaaataagccgccatggcttaatcttactaacaatcagaatgggagtttcatcttt
gagttcgaaaattattcagatctccaagaatgtcgagattttgtgggaaaagttcttgca
aagggtggagaagtttctgaaaaaccgactgttgcatatcctgatgagcaactcagtgcc
gctgaaatggagctgcgaattaagttattacaggaagatagtgaactgcagaaacttcac
aagcaatttgtgctaagtggtgtcctcacagaaactgagttttgggcaacacgaaagaag
ttgttggatagagaagccagcaaaaagacaaaacagcggctgggtttcaaaagtgcaatg
atttctgacatcaaaccatcaactgatggtcggacaaacaaagtcacatttaatttgaca
ccggaggtcattcttcaaatatttgcggagaagccagctgttcaccgtgcattcttaagt
tatgttcctaacaagatgtcagaaaggactttctggacaaaatattttagagcagaatac
ctacatagtacgaaaaacagtattgctgctgcagcagaggctgctgaagatgaggaactt
gctgtatttctaaagcaggatgacatattggcaagtgaggcgcggaagaagatccggcgg
gttgacccaactctggacatggaggctgatgagggtgatgattatacacatcttccggat
catgggattttacgtgaaggtagtaaggaaatgacagaatcacaaaatgagctatacaaa
agatctctatcccaggatattaaccggcatgctgcggttgttcttgagggaagagctgta
gatgtggagttggaagacacgaaggctgtagcagaagcacttgctcagtcaaaacagaaa
tcatcaaataagggagaatctgatggggatacaagccgtgagaggttagataggttatca
aggatgactgaaatagaagatcttcagggaccaaatactcttccactagcaccactttgc
attaaggaccctcgagattattttgattctcaacaagctaatgcacttagaagttctgga
gatgcacttggtgaaattaaacaaataaaatgcggtttgagcacccaggaggtgtatggt
tctttaagggagtccatctcatcgattagagctatggggttgaaggagcctattgtcaaa
cctgaagttgctcatcaagtttttgatgctttgaccaatagtatctccaacaccaaatat
catattgggaaaaatcctcaagagagtgttctggacagacttccgaggaaaactaaggag
gagctattgcatcattggacatcaatccttgaactactcaaacatttttgggcatcatat
cctatcaccaccacttacctctatgtgaaggtaaacagattaaaggatgccatgtcaaat
atctatccacagctagaggagattaagggatctgtcccatcagagcttcggcatcaggtt
tccctccttgttcgtccaatgcatcaggctctagatgctgctattcaacattatgaagca
agcatgcagaagagatccgcacaaagtggagagagaccaaacggatatgtgtag
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