Gossypium arboreum (tree cotton): 108475972
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Entry
108475972 CDS
T05776
Name
(RefSeq) paired amphipathic helix protein Sin3-like 4
KO
K11644
paired amphipathic helix protein Sin3a
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gab03036
]
108475972
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108475972
REST complex
108475972
Heterochromatin formation proteins
Other heterochromatin formation proteins
108475972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
108475972
NCBI-ProteinID:
XP_017633479
LinkDB
All DBs
Position
3:12482879..12493048
Genome browser
AA seq
1445 aa
AA seq
DB search
MKRSRDEVYIGGSQLKRPVVSSRGEGSGQQQMVGGTGATQKLTTNDALAYLKAVKDIFQE
KREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGYRDLILGFNTFLPKGYEITLPLEDE
QPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFR
DHPDLLLEFTHFLPDTSATASNHYASTGRNSIPRERSSAMPGMCAVPADKKDRSTALLGD
CDLSMERADPDHDRVMTKAEKEQRRRGEKERDKTEDRDIRDREQDDRDFEIDGNRDFNMR
FPHKRNGKPARRSEESGVEQLQQVGGDGSTYDDKNAMKSVYNQEFAFCDKVKEKLRNPDH
YQEFLRCLHLYSNEVISRTELQSLVNDLLGRYPDVMDGFNKFLMQCEKNEGLLADFVSEK
YLRNEGQLPRSVKMEDRDRDRERDNGVKIRDRETRERDRHDRSSFANKDAGHKVSLFSSK
DNKYFGKPINELDLSNCERCTPSYRLLPKNYPIPSASQRTELGSEVLNDHWVSVTSGSED
YSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKINNNIIKLDSPIRIE
EHFTALNLRCIERLYGDHGLDVMDVLRKNAHLALPVILTRLKQKQEEWARCRSDFNKVWA
EIYAKNYHKSLDHRSFYFKQQDSKNLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPI
IPNLKFEYPDPEIHEDLYQLIKYSCGEMCTTEQLDKVIKIWTTFMEPMLGVPCRPQGAED
TEDVVKAKNNTVKNGTASVGESEGSPGGAGVAMNSKHSNPSRHEDESIPPEQSSSCRSWL
LNGDNGVKQDGSADIDSVGHKNASSCDAPQQDRMQVSPANGDEIAGVSKQASTSERLVAS
NASLIARVEQSNGRTSIENTSGLIATPSRPGNAAVEGGLELKANNENLPSSEGGGCSRPI
ISGNGMMTEGSKNHRYNEESVAQLKVEREEGELSPNGDFEEDNFADYGEASLEIALKVKE
GAANRQYQRHGEEEVCRGEAGGENDADADDEGDESAQRTSEDSENASENGEVFGSDSGEG
ESREEQEEDIDHDEHDNKVESEGEAEGMADAHDAEADVTLLPFSERFLLTVKPLAKYVPS
PLHENKKDSQVFYGNDSFYVLFRLHHTLYARIQSAKINSSSADRKWRASSDPSPTDLYAR
FMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKIVKQLQAIASDEMDNKLL
QLYAYEKSRRSRRFDVVYHENARVLLHDENIYRIECSSTPTCLSIQLMDYGHDKPEVTAV
SMDPNFAAYLHNDFLSVVPKEKEKPGIFLKRNVRKCAGGDELSSTCRTTEGLKVVNGLEC
KIACNSSKVSYVLDTEDFLFRVKWKSALNQNSQCQNRATVSNGNSIRLRRQQRYQRLLLA
YTSMA
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggtctagagatgaggtttacatcggcggctcccaacttaaaagaccagtggtt
tcttctcgaggagaaggctctgggcaacagcagatggtaggagggacaggagctacccag
aaacttacgacaaatgatgcattggcatatctcaaggcagttaaagatatatttcaagaa
aagagggagaaatatgacgacttccttgaagtaatgaaagacttcaaggctcaaagaatt
gatactgcgggtgtcatagccagggtaaaggagttatttaaagggtatcgagacctaatt
ttgggtttcaatacctttttgcccaaaggatatgagatcaccctcccattggaggatgaa
caacctccccaaaagaagcctgtggagtttgaagaagctattaattttgtaaacaaaatt
aagacaaggtttcagggtgatgaccatgtctacaaatcatttttagacattttgaacatg
tatagaaaagaaaataagtctatcactgaggtctaccaggaggttgctgctcttttccga
gaccatccagatctgcttttggagttcactcattttctgcctgatacctcagcgacagcc
tctaatcattatgcttctactggtagaaactctataccccgagagaggagctctgctatg
cctggaatgtgtgcagtgcctgctgacaagaaagataggagtacagctctgcttggtgac
tgtgaccttagcatggaacgtgctgatcctgatcatgatagagttatgacgaaagctgaa
aaagagcaaagaaggcgtggtgaaaaagaaagggacaagacagaagacagagatataaga
gatcgagagcaggatgatcgagattttgaaattgatggcaacagagacttcaacatgcgg
tttccacataaacggaatggaaaacctgctcgtagaagtgaagaatcaggtgtggaacaa
ttgcagcaagttgggggggatggttctacatatgatgataaaaatgcaatgaaaagtgtt
tacaatcaggagtttgctttctgtgataaagtgaaggagaagttacgaaatcctgatcat
tatcaggaatttttgaggtgccttcatctctatagcaatgaagtaatctcacgcacagaa
ttgcaatctttggtgaatgatttgcttggaagatacccagatgtgatggatggttttaat
aagtttttgatgcagtgcgagaagaatgagggcttgcttgcggattttgttagtgaaaag
tacttgcggaatgaagggcagttacctagatcagttaagatggaagacagagatagagat
cgtgaaagggataatggggtcaagattagagaccgtgaaacccgggaaagggatagacat
gacagaagttcctttgccaataaagatgcaggtcacaaggtttctttattctccagcaag
gataataaatactttggaaaacccattaatgaacttgacctctccaattgtgaacggtgc
actcctagttatcgacttcttccaaagaattacccaataccttctgcaagccagagaaca
gagctaggttctgaagttctcaatgatcattgggtttctgtcacttctgggagtgaggac
tactctttcaaacacatgcgcaaaaaccagtatgaagaaagcttatttcgatgtgaagat
gacaggtttgaactggatatgttgttagagtcagtgaatgcaacaaccaagcgagtagaa
gaactattagaaaagattaacaataatattatcaaactagacagtccaattcgcatcgag
gagcacttcacagctctgaatcttaggtgcattgaacgtttatatggtgaccatggactt
gatgtgatggatgttttaaggaagaatgcccatcttgctttgccagttattttaacccgc
ttgaagcagaaacaagaagagtgggctagatgtcgatctgattttaataaagtttgggct
gaaatttatgctaagaattatcataaatcgcttgaccaccgtagcttctattttaagcag
caggactccaagaacttaagcactaaagctctgttggctgagatcaaagaaatcagcgag
aagaagcgcaaagaagatgatgtgcttcttgctattgctgctggaaacagacggccaatt
attcccaatttgaagttcgagtaccctgatcctgaaattcatgaagatctttatcagctc
atcaaatattcctgtggagaaatgtgtacaactgaacaattggataaagtaattaaaata
tggactaccttcatggaacctatgcttggggttccttgccgtcctcagggagcagaggac
actgaagatgttgtgaaggctaaaaacaacactgtcaaaaatggtactgctagcgttggt
gagagtgaagggagccctggtggtgctggcgttgccatgaattccaaacattcgaatcct
tccagacatgaagatgaaagtattccacctgagcaatcaagttcttgtaggtcttggttg
ctgaatggggataatggtgtcaagcaagatggttctgctgatatagatagtgttggtcat
aagaatgcatcttcctgtgatgctcctcaacaagatagaatgcaggttagtccagctaat
ggtgacgaaatagcaggggtcagtaaacaagctagtaccagtgaacggttggtcgcttca
aatgcatctcttattgcacgagtggagcaaagcaatggaagaactagcattgagaatact
tcaggtcttattgctactccttccagacctggtaatgctgctgttgagggtggacttgaa
ttaaaggcaaataacgaaaatttaccttcatcagagggtggcggttgttctaggccaatc
atatctggaaacgggatgatgacagaaggctctaaaaaccacaggtataatgaagaatct
gttgcacaacttaaagttgaaagggaagaaggtgaactatccccaaatggggattttgag
gaagacaattttgctgattatggagaagctagtttggagattgctcttaaggtgaaggaa
ggtgcagcaaacagacaataccagagacatggagaggaggaagtgtgccgtggggaggct
gggggagagaatgatgctgatgctgatgatgaaggtgatgaaagtgctcagaggacatca
gaggatagtgagaatgcttctgagaatggtgaggtttttggaagtgattctggcgaaggt
gaatcgagggaggagcaagaggaagatattgatcatgatgaacatgataataaagtggag
agtgaaggggaggctgaagggatggctgatgcccatgatgcggaagctgatgttacattg
ttaccattttcagaacgtttcctgctaactgtaaagccccttgcaaagtacgtcccttca
ccattacatgagaacaagaaggattcacaagttttctatggaaatgactcattttacgtg
ctttttaggcttcaccatacattgtatgcgagaatacaatcagctaagattaattcatca
tctgcagataggaaatggagggcttctagtgatcctagtcctactgatctctatgctagg
ttcatgagtgcactttacaatttgctcgatggctcttctgataatacaaaatttgaggat
gattgccgagctatcattggaactcagtcttatgttctattcacattagataagctgata
tataaaattgtcaaacagcttcaagccattgcaagtgatgaaatggacaataagcttctt
caactatatgcatatgagaaatcaaggagatctagaagatttgatgttgtttatcatgaa
aatgctcgtgttctccttcacgatgagaatatatatcgaattgaatgttcatcaactcca
acgtgtctttccatccagcttatggactatggacatgataagcctgaagtgacagctgtt
tccatggaccctaattttgctgcatatttgcacaatgactttctctcagttgttcccaag
gaaaaagagaagcctggaatattcttgaagaggaatgtacgcaaatgtgcgggtggtgat
gaactctcttcaacatgccggacaacagaaggacttaaagtggttaatggtttggagtgc
aagattgcttgcaattcttccaaggtgtcttatgttttggacacggaagattttttgttc
agagtgaaatggaaatcagccttgaaccagaacagccaatgccaaaaccgggcaacggtt
tcaaatgggaattcaattagactacgaagacaacagcgatatcagagattacttctagca
tatacttccatggcataa
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