Gossypium arboreum (tree cotton): 108476055
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Entry
108476055 CDS
T05776
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108476055
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gab04147
]
108476055
Membrane trafficking [BR:
gab04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
108476055
Exosome [BR:
gab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108476055
Exosomal proteins of bladder cancer cells
108476055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
TPR_COPA_B
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_SPT8
NBCH_WD40
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_At4g14310
Motif
Other DBs
NCBI-GeneID:
108476055
NCBI-ProteinID:
XP_017633610
LinkDB
All DBs
Position
3:1500336..1506195
Genome browser
AA seq
1213 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
MSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEHPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGSLKKKGASPADDILR
LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAAHP
EINLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYDFSTQKETQIVPIRRAG
STTLNQCPRTLSYSPTENAVLICSDVDGGTYELYQIPKDSIGRSDLQEAKRGPGSSAIFV
ARNRFAVLDKSNNQVLIKNLKNEVVRKSGLPVPTDAIFYAGTGNLLCRSDDRVVVFDLQQ
RLVLGDLQTPFVKYVVWSSDMESVALLSKHSIIITSKKLVHQCTFHETIRVKSGAWDENG
VFIYTTLNHIKYCLPNGDSGIIRTLDVPIYLTKVSGNKIFCLDRDGKNKTLVIDATEYIF
KLSLLRKRYDHVMSMIRNSQLCGEAVIAYLQQKGFPEVALHFVKDEKTRFNLAIESGNIQ
IAVASAKEIDDKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLINGNLEKLSKM
LKIAEVKNDVMGQFHNALYLGDIQERVKILENAGHLPLAYVTASVHGLHDVAERLAAELG
DDVPSFPEGKEPSLLMPPAPIICGGDWPLLRVMKGIFEGGFDSTGRGAADEEEEGADGDW
GEDLDMVDSDGLQNGDVTAILEDGEVAEDNEEGGWDLEDLELPPEVETPRVNARSSVFVA
PTPGMPVCQIWTQRSSLAADHATAGNFDTAMRLLSRQLGIRNFTPLKSMFLDLHTGSHSY
LRAFSSAPVVSLAVERGWSESASPNVRGPPALVFNFSQLDEKLKAGYKATTDGKFTEALR
LFLNILHTIPLIVVESRREVDEVKELIIIAKEYVLGLQMELKRRELKDNPVRQQELAAYF
THCNLQMPHLRLALRNAMTICFKAKNLATAANFARRLLETNPNENHSKAARQVLQASERN
MTDASQLNYDFRNPFVTCGATYVPIYRGQKDLSCPYCTTRFVPTQEGQLCTICDLAVIGA
DASGLLCSPSQIR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgttgacaaagtttgagacgaagagcaatagagtgaagggactaagtttccatactaag
aggccatggatcttagctagtctccacagcggcgttatccagttatgggactatcgaatg
gggactttgattgatcgatttgacgaacacgatggccctgttcgtggcgttcattttcac
atgtctcagcctttgtttgtctctggaggggatgactacaagataaaggtctggaactac
aagttgcatagatgtctttttacccttcttggacatcttgattatattcgtactgtgcaa
tttcatcatgaacatccatggattgtgagtgccagtgatgatcaaaccattcgcatatgg
aactggcagtctcgaacttgcatctctgtgttgactggtcataatcattatgttatgtgc
gcctcattccatcctaaagaagacctggttgtgtcggcctctcttgaccagactgttcga
gtttgggatattggttccttgaaaaagaagggtgcctccccagcggatgacattttacgg
ttgagtcagatgaacacagatctttttggtggtgttgatgcagttgtcaagtatgtgttg
gaaggtcatgaccgaggagtaaattgggctgcatttcatccgactttacctttgatagtc
tctggtgctgatgaccgccaagtgaaattgtggcgtatgaatgataccaaggcttgggaa
gtggataccttgagaggacacatgaataatgtgtcatgtgtcatgttccatgccaaacaa
gacatcattgtatccaattccgaggataaaagtattcgagtgtgggatgcaacaaagcga
actggacttcaaactttccgtcgagaacatgacaggttctggattcttgcagcccatcct
gagattaatcttttggcagctggacatgacagtggcatgattgtatttaagctagagaga
gaacggcctgcttttgcagtcagtggggattctctgttttatgccaaggatcgattttta
aggtattatgacttttcaacacaaaaagagacacaaatagttcctatccggcgggccggt
tccacaaccctgaatcaatgtccaaggactctttcttatagtcccacagaaaatgccgtc
cttatctgctcagatgttgatggaggaacttatgagttgtatcagataccaaaagacagc
attggtaggagtgacttgcaggaggcaaagagaggtcctggtagttctgctatatttgtg
gctcggaaccgttttgctgtacttgacaaaagcaacaaccaagtcttaatcaagaatctt
aaaaatgaggttgttagaaaaagtggtcttcctgtgcctacagatgcaattttctatgct
ggaacaggtaatttattgtgtagatcagatgatagagtggttgtatttgatctccagcag
agacttgttcttggtgatctacaaacgccttttgtgaagtatgttgtttggtctagtgac
atggagagtgtcgctttgctcagcaagcattccattatcattactagcaagaaacttgtg
caccagtgcacttttcatgagacaatacgagttaagagtggagcctgggatgaaaatggc
gtttttatttataccactctaaaccatataaaatactgcctacccaatggagatagtgga
ataattcgaactcttgatgttccaatatacctaactaaggtttctggaaacaaaatattt
tgcctggaccgtgatgggaagaacaagacgctggtcattgatgctacagaatacattttt
aagctgtctctgcttcggaagaggtatgatcatgttatgagcatgataagaaactcccag
ctttgtggtgaggccgtgattgcttatctacaacagaaggggttccctgaagtggctctc
cattttgtcaaagatgagaaaactcggtttaacttggctatagagagtgggaacattcaa
attgctgttgcatcagctaaggagattgatgacaaggatcactggtataggttgggtgtg
gaagcccttcgccaaggcaatgcaggtatagttgaatatgcctaccagaggacaaagaac
tttgagaggttgtcttttctttatctcataaatggtaacctggaaaagctgtccaagatg
ctgaagattgcagaagtcaagaacgatgttatgggccagtttcacaatgccttgtatctt
ggtgatatccaagaacgtgtaaagatcttggagaatgctggtcatttgcctcttgcttat
gttacagcatcagtccatgggctacatgatgttgcagaaaggttagctgctgagttggga
gatgatgtcccttcttttccggaagggaaagaaccttccttattgatgcctccggcaccc
attatttgtggtggtgattggcccctgttgagagtaatgaaaggtatatttgaaggtgga
ttcgatagtactggcaggggtgcggcggatgaagaagaggagggtgcagatggtgattgg
ggtgaagatcttgatatggtcgattctgatggcttgcagaacggagatgttactgcaatt
ttggaggatggggaagtggctgaagacaatgaagagggtggatgggaccttgaagacttg
gaactccctcctgaggtagagacaccaagggttaatgctcgttcttctgttttcgtggca
ccgactcctggcatgcctgtctgtcaaatttggactcagagatcgtcacttgctgctgat
catgcgaccgctggcaattttgatacagccatgcgtttgctgagcaggcaacttggaata
agaaactttactcctttaaaatccatgtttctcgatcttcacactggcagccatagctat
cttcgtgcattttcatctgcgccagtggtgtccttggcagttgagaggggatggagtgag
tctgctagtcctaatgtgaggggtccacccgctctcgtattcaacttttctcagctggac
gaaaagctgaaggctgggtacaaggccacaacagatggaaaatttaccgaggctcttcgg
cttttcctcaacattcttcatacaattccattgattgttgtggagtcaaggagggaagtt
gatgaagtcaaagagttaattatcattgccaaggagtatgttcttggtctgcagatggag
cttaagcgtagagaattgaaagacaatccggtacgccagcaggagcttgctgcctacttc
acccattgcaaccttcaaatgcctcatctcagacttgctctgcgaaacgcaatgaccatc
tgtttcaaggcaaaaaacctggctacagccgctaacttcgccaggcgtcttctagaaaca
aaccctaatgagaaccattcaaaggcagcgaggcaagtactccaggcttcagagaggaat
atgacagatgcatctcagttaaactacgatttcaggaacccttttgtgacatgcggggca
acttacgtcccgatttaccgaggacagaaagatttatcttgcccttactgtactactcgc
ttcgtgcctacccaggagggtcaattgtgtacaatctgtgatctcgctgtgattggagca
gatgcatcaggtttgctctgttctccttctcaaattcgatga
DBGET
integrated database retrieval system
