Gossypium arboreum (tree cotton): 108476117
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Entry
108476117 CDS
T05776
Name
(RefSeq) coatomer subunit alpha-1-like isoform X1
KO
K05236
coatomer subunit alpha
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108476117
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gab04147
]
108476117
Membrane trafficking [BR:
gab04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
108476117
Exosome [BR:
gab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108476117
Exosomal proteins of bladder cancer cells
108476117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
TPR_COPA_B
Beta-prop_TEP1_2nd
EIF3I
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_At4g14310
Motif
Other DBs
NCBI-GeneID:
108476117
NCBI-ProteinID:
XP_052881332
LinkDB
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Position
3:complement(1491914..1498059)
Genome browser
AA seq
1213 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
MSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEHPWVVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDVSSLKKKGASPADDILR
LSQMNTDLFGGVDAVVKYVLDGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAAHP
EINLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRCYDFSTQKETQIVPIRRPG
STTLNQCPRTLSYSPTENAVLICSDVDGGTYELYQIPKDSIGRNDLQEAKRGPGSSAIFV
ARNRFAVLDKSNNQVLIKNLKNEVVKKSGLPVPTDAIFYAGTGNLLCRSDDRVVVFDLQQ
RLVLGDLQTPFVKYVVWSSDMESVALLSKHSIIITSKKLVHQCTFHETIRVKSGDWDENG
VFIYTTLNHIKYCLPNGDSGIIRTLDVPIYLTKVSGNKIFCLDRDGKNKTLVIDATEYIF
KLSLLRKRYDHVMSMIRNSQLCGEAVIAYLQQKGFPEVALHFVKDEKTRFNLAIESGNIQ
IAVASAKEIDDKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLINGNLEKLSKM
LKIAEVKNDIMGQFHNALYLGDIQERVKILENAGHLPLAYVTASVHGLDDVAERLAAELG
DDVPSLPEGKKPSLLMPPAPVICGGDWPLLRVMKGIFEGGFDSTGRGAVDEEEEGADGDW
GEDLDMVDADGLQNGDVTTILEDGEVAEDNEEGGWDLEDLELPPEVETPRVNARSSVFVA
PTPGMPVSQIWSQRSSLAADHAAAGNFDTAMRLLSRQLGIRNFAPLKSMFLDLHTGSHSY
LRAFSSAPVVSLAVERGWSESASPNVRGPPSLVFNFSQLDEKLKAGYKATTDGKFTEALR
LFLSILHTIPLIVVESRREVDEVKELIIIAKEYVLGLQMELKRRELKDNPVRQQELAAYF
THCNLQMPHLRLALRNAMTICCKAKNLATAANFARRLLETNPNENHSKAARQVLQVSERN
MTDASQLNYDFRNPFVTCGATYVPIYRGQKDLSCPYCTTRFMPTQEGQLCTICDLAVIGA
DASGLLCSPSQIR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaagtttgagacgaagagtaatagagtgaagggactaagtttccacaccaag
aggccgtggatcttagctagtcttcacagtggcgttattcagttatgggactatcgaatg
gggactttgattgatcgatttgacgaacacgatggccctgttcgtggtgtccattttcac
atgtctcaacctttgtttgtctctggaggggatgactacaagataaaggtctggaactac
aagttgcatagatgtctttttacccttcttggacatcttgattatattcgtactgtgcaa
tttcatcatgaacatccatgggttgtgagtgccagtgatgatcaaaccattcgcatatgg
aactggcagtctcgaacttgcatctctgtgttgactggtcataatcactatgttatgtgc
gcctcattccatcctaaagaagacctggttgtgtcggcctcccttgaccagacagttcga
gtttgggatgttagttccttgaaaaagaagggtgcctccccagcagatgacattttacgg
ttgagtcagatgaacacagatctttttggtggtgttgatgcagttgtcaagtatgtgttg
gatggacatgaccgaggagtaaattgggctgcatttcatccgactttacctttgatagtc
tctggtgctgatgaccgccaagtgaaattgtggcgtatgaatgataccaaggcttgggaa
gtggataccttgagaggacacatgaataatgtgtcatgtgtcatgttccatgccaaacaa
gacatcattgtatccaattccgaggataaaagtattcgagtgtgggatgcaacaaagcga
actggacttcaaactttccgtcgagaacatgacaggttctggattcttgcagcccatcct
gagattaatcttttggcagctggacatgacagtggcatgattgtatttaagctagagaga
gaacggcctgcttttgcagtcagtggggattctctgttttatgccaaggatcgattctta
aggtgttatgacttttcaacacaaaaagagacacaaatagttcctatccggcggcccggc
tccacaaccctgaatcaatgtccaaggactctttcttatagtcccacagaaaatgcggtt
cttatctgctcagatgttgatggaggaacttatgagttgtatcagataccaaaagacagc
attggtaggaatgacttgcaggaggcaaagagaggtcctggtagttctgctatatttgtg
gctcggaaccgttttgctgtactcgacaaaagcaacaaccaagtcttaatcaagaatctt
aaaaatgaggttgttaaaaaaagtggtcttccggtgcctacagatgcaattttctatgct
ggaacaggtaatttattgtgtagatcagatgatagagtggttgtatttgatctccagcag
agacttgttcttggtgatctacaaacgccttttgtgaagtatgttgtttggtctagtgac
atggagagtgtcgctttgctcagcaagcattccattatcattactagcaagaaacttgtg
caccagtgcacttttcatgagacgatacgagttaagagtggagactgggatgaaaatggc
gtttttatttacaccactctaaaccatataaaatactgcctacccaatggagatagtgga
ataattcgaacacttgatgttccaatatacctaactaaggtttctggaaacaaaatattt
tgcctggaccgtgatgggaagaacaagacgctggtcattgatgctacagaatacattttc
aagctgtctctgcttcgtaagaggtatgatcatgttatgagcatgataagaaactcccag
ctttgtggtgaggccgtgattgcttatctacaacagaaggggttccctgaagtggccctc
cattttgtcaaagatgagaaaactcggtttaacttggctatagagagtgggaacattcaa
attgctgttgcatctgctaaggagattgatgacaaggatcattggtataggttgggtgtg
gaagcccttcgccaaggcaatgcaggtatagttgaatatgcctaccagaggacaaagaac
tttgagaggttgtcgtttctttatctcataaatggtaacctggaaaagctgtccaagatg
ctgaagattgcagaagtcaagaacgatattatgggccagtttcacaatgctttgtatctt
ggtgatattcaagaacgtgtaaagatcttggagaatgctggtcatttgcctcttgcttat
gttacagcatcagtccatgggctagacgatgttgcggagaggttagctgctgagttggga
gatgatgtcccttctttgccggaagggaaaaaaccttccttattgatgcctccggcaccc
gttatttgtggtggtgattggcccctgttgagagtaatgaaaggtatatttgaaggtgga
ttcgatagtactggcaggggtgcagtggatgaagaggaggagggtgcagatggtgattgg
ggtgaagatcttgatatggtcgatgctgatggcttgcagaacggagatgttactacaatt
ttggaggatggggaagtggctgaagacaatgaagagggtgggtgggaccttgaagacttg
gaactccctcctgaggtagagacaccaagggttaatgctcgttcttctgttttcgtggca
ccaactcctggtatgcctgtgagtcaaatttggagtcagagatcgtcacttgctgctgat
catgcggctgctggcaattttgatacagccatgcgtttgctgagcaggcaacttggaata
agaaactttgctcctttaaaatccatgtttctcgatcttcacactggcagccatagctat
cttcgtgcattttcatctgcgccagtagtgtccttggcagttgagaggggatggagtgag
tctgctagccctaatgtgaggggtccaccctctctcgtattcaacttttctcagctggac
gaaaagctgaaggctgggtacaaggccacaacagatggaaagtttactgaggctcttcgg
cttttcctcagcattcttcatacaattccattgattgttgtggagtcgaggagggaagtt
gatgaagtcaaagagttaattatcatcgccaaggagtatgttcttggtctgcagatggag
cttaagcgtagagaattgaaagacaatccggtacgccagcaggagcttgctgcctacttc
acccattgcaaccttcaaatgcctcatctcagacttgctctgcggaacgcaatgaccatc
tgttgcaaggcaaaaaacctggctacagccgctaactttgccaggcgtcttctagaaaca
aaccctaacgagaaccattcaaaggcagcgaggcaagtactccaagtttcagagaggaat
atgacagatgcatctcagttaaactacgatttcaggaacccttttgtgacatgcggggca
acttacgtcccgatttaccgaggacagaaagatttatcttgcccttactgtactactcgc
ttcatgcctacccaggagggtcaattgtgtacaatctgtgatctcgcagtcatcggagca
gacgcatcaggtttgctctgttctccttctcaaattcgataa
DBGET
integrated database retrieval system
