Gossypium arboreum (tree cotton): 108477109
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Entry
108477109 CDS
T05776
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108477109
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108477109
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
108477109
NCBI-ProteinID:
XP_017635053
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Position
1:85136774..85141352
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AA seq
644 aa
AA seq
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MPSQGVKLYVQDKHVVLDNGILQVTISNPDGIVTAIQYNGIDNLLAVENQEADRGYWDLV
WNLAGSKGTKGKFDRIEATSFEVIVENEDQVELSFTRTWNPSLEGKVVPLNIEKRFIMLR
NSSGFYTYAIYEHLKEWPAFNLDRFRVAFKLRKDKFHYMAMADNRQRYMPLPDDRLPYRS
QTLAYPEAVLLVDPMETEFRGEVDDKYQYSCENKDNRVHGWICNDPPVGFWQITPSDEFR
SAGPHKQNLTSHVGPTTLAVMHSVHYSGEDLILKFGSNEAWKKVFGPIFIYLNSLSDAGG
NPLSLWEDAKQQMRIEVQDWPYTFPASQDFPQSHQRGNVSGRLLVKDRYVCKDYIPANGA
YVGLAPPGDVGSWQSEVKGYQFWTRADEDGYFCINNIWTGDYNLYAWVPGFIGDYKYDVI
ITPSAGYDIFMGDLVYEPPRDGPTLWEIGVPDRTAAEFYVPDPSPMFVNRLYVNHPDRFR
QYGLWERYADLYPDRDLVYTVGVSDYTKDWFFAQVTRKNDDNTYQGTTWQIKFKLDCAAN
ETETYKLRLALATAHAAELQVRVNDDGKSPLFSSGQIGKDNTIARHGIHGLYRLYHVGIP
GNLLLEGDNTIFLTQPKSTSPFQGIMYDYIRLEGPASSNGNKKP
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgccatctcagggagtgaagttatatgtccaagataaacatgtggtcttggataatggt
atactgcaggtcacaatatctaatccagatggcattgtcactgctattcaatataatggc
attgacaatttgcttgctgttgaaaaccaggaagctgatagagggtattgggacctcgtc
tggaatctagcaggaagcaaaggaacaaagggtaaatttgacaggattgaagcaacgagt
tttgaagtaatagtggaaaatgaggatcaggtggagctttcatttactagaacatggaat
ccttcccttgaaggcaaagtcgttcccttgaacatcgagaagaggtttataatgcttcgt
aattcctcaggattctacacctatgcaatttacgagcacttgaaggaatggcctgctttc
aaccttgacaggttcagggttgcattcaagttgaggaaagacaagtttcattacatggca
atggcagacaacagacaaagatacatgcccttgcctgatgaccgtttaccttacagaagc
caaaccttggcttatccagaggctgtcctactggttgatccaatggaaactgagtttaga
ggagaggttgatgacaagtaccagtattcatgcgagaacaaggacaacagggtccatgga
tggatttgcaatgacccgccggtggggttctggcaaataactcctagtgatgagtttcga
tctgccgggcctcacaagcaaaaccttacctctcacgtcggcccgaccacccttgccgtt
atgcacagtgttcattattcaggagaggatttgatattgaaatttggaagtaatgaggct
tggaagaaagtctttggccccatttttatttatcttaattctttgtcggatgctggaggt
aacccactttcactttgggaagatgctaaacaacagatgagaattgaagttcaagactgg
ccctatactttccctgcttctcaagactttccacaatcccatcaaaggggcaatgtcagt
ggtagattactagtgaaagacagatatgtttgcaaagactacatacctgccaatggtgcc
tatgtggggttagcaccccctggagatgttggatcttggcagagtgaagtcaagggctat
caattctggactagagctgatgaagatggctatttctgcattaacaatatttggaccggt
gactataatctatatgcatgggttcctggtttcattggtgattataaatatgatgttatc
atcacccctagcgcagggtatgatatattcatgggtgatcttgtatatgaaccgccaaga
gatggccctacattgtgggaaattggagtcccggatcgcactgctgcagaattctacgtt
cctgatccgagtccgatgtttgtcaacaggttatatgttaaccatcctgacagatttagg
cagtatgggttatgggaaagatatgcagatttatatcctgatagagatttggtttacaca
gttggggttagtgactatacaaaagactggttttttgctcaggtcaccagaaagaatgat
gacaacacatatcaaggaactacatggcaaatcaaattcaaactagattgtgctgcaaat
gaaaccgaaacatacaaactacgattggcattggctactgcacatgctgctgaacttcag
gtaagggtcaatgatgatggaaagtctcctctattttcaagtggacaaattggtaaagac
aacacaatagccagacatggtatccatgggctttaccggctttaccatgtcggtattccg
gggaatctgcttcttgaaggagataacaccatatttctaactcaaccgaaaagcaccagc
cctttccaaggaattatgtatgactatattcgattagaaggccctgcatcttctaatgga
aacaagaaaccttaa
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