Gossypium arboreum (tree cotton): 108477494
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Entry
108477494 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108477494
KO
K10756
replication factor C subunit 3/5
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03030
DNA replication
gab03410
Base excision repair
gab03420
Nucleotide excision repair
gab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108477494
03410 Base excision repair
108477494
03420 Nucleotide excision repair
108477494
03430 Mismatch repair
108477494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gab03032
]
108477494
03036 Chromosome and associated proteins [BR:
gab03036
]
108477494
03400 DNA repair and recombination proteins [BR:
gab03400
]
108477494
DNA replication proteins [BR:
gab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108477494
DNA Replication Termination Factors
ELG1-RFC complex
108477494
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
108477494
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108477494
Check point factors
HRAD17(Rad24)-RFC complex
108477494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
Motif
Other DBs
NCBI-GeneID:
108477494
NCBI-ProteinID:
XP_017635530
LinkDB
All DBs
Position
12:complement(15466688..15470605)
Genome browser
AA seq
729 aa
AA seq
DB search
MDNLSQSSKASKRHSYTPMKQRRSGYEPSDTETEWQDHHNRKNRTSMLVEADNMVFNLPR
NISPLRLNRKVEYENGSPPGTSPLPRRHNSRSPYKTRRDDGRNVSPLSKSKRENRRHVSP
YKPGREDHNLITEMGNGNTSGLFRKQSRRIPKREGRATIGQFLEAGKGSDYSRRSVTAPR
QRGDRRTPSPISRSMVHKQRTVGEINEMVANEMISRSPMYNACMFESTESISPGDIFFSR
DAGASPMQNNVLTNNGSFGNHVLPKPPMFEQNDFSSHQRMRANGNVDPKARGFSSSAGLK
LSTQNSKISDSSGRRSSVNSGKFTANRLKGQSETWFACVMRRGPCRTSKKSSEKQDFDEA
SFIGKAIVVEKLRQFWADKYQPASLDGFTCHKQEAQLLKQLVSYESCLHILFKGPSGSGK
RALTMAFLREIYGDPSWNVSHELRKFQVQEKRPMQVIVPLVSSAHHVELNVNLGNAKYAL
MGLVKEISSYYAITPETSTASFKTNHKVIVLHDVDKAPDNIHHLVKWIMDYHSDSCKFIL
CCEDDIDILDSVTNRCKVIKVDTPVTHEIMEVLIQIARKEEFDLSMNFAAKIAAKSKQNL
RKAIMALEACKAHNYPFTDDQPIPLEWEEVLTELASEILADPAHRRLCIVRGKLQKLLVD
FVHPKLILQKLVEQFLNHVEAGLKRELYYWHAYYDKRLPTGTSALLKLEEFVAKFMGIYR
KSWYNRQCV
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggataacttgtcgcaaagcagcaaagcttctaagcgtcattcctatactccaatgaag
caaaggcgaagtggttatgagccatcagatacagagactgaatggcaagatcatcataac
cgaaagaacagaacatccatgcttgttgaagcagataacatggtgttcaatttgcctaga
aacattagtcctttgagactcaaccgaaaggttgaatacgaaaacggttctccacctgga
acaagtccccttccaaggagacacaacagcaggtctccttacaagacaaggagagatgat
ggtcgaaatgttagccccttgtcgaagtcaaaacgtgagaatcggaggcatgtttctcct
tataaacctggaagagaggaccataatttgattactgaaatgggaaatggtaacacttct
ggcttatttaggaagcaaagtcgtagaattccaaaaagagagggaagagcaacaatagga
cagtttcttgaggctggtaaagggagtgactatagccgtcgatcagtgactgcaccacga
cagagaggggatcggaggacaccgtcaccaatctcaaggagcatggtacacaagcaaaga
acagtaggtgaaatcaatgaaatggtggccaatgaaatgatttctagaagtcctatgtat
aatgcttgtatgttcgaaagcacggagtccatttcacctggtgatatcttcttttctcgt
gatgctggggcctcgccaatgcaaaacaatgtgttgacaaataacggaagctttgggaac
catgttctcccaaagccaccaatgttcgaacaaaatgatttttcttcccatcaacgaatg
agagctaatggaaatgttgatccaaaagctcgagggttctcatcgagtgcaggcttaaag
cttagcactcaaaacagtaagataagtgatagtagtgggaggaggagtagtgtaaactct
gggaagttcacagcaaatagactaaagggacaaagtgagacatggtttgcttgcgtgatg
aggagaggaccctgcaggacctcaaagaaatcatcagaaaagcaagatttcgacgaggcc
tctttcattgggaaggcaattgtagttgaaaaactaaggcagttttgggctgataaatat
caaccagcttctttggatggattcacctgtcacaagcaagaagctcagcttctgaagcaa
cttgtatcctatgaaagttgtcttcatatattgttcaaagggccatctggttctgggaaa
agggcactaacaatggctttcctgcgagaaatatatggcgaccctagttggaatgtatct
catgaactaagaaaattccaagttcaggagaaaaggccaatgcaagttattgttccactt
gtttcgagtgctcatcatgtggagcttaatgtcaacttgggaaatgctaaatatgcatta
atgggattggtcaaagaaataagctcctattatgcaattacccctgaaaccagcactgct
agttttaagacaaaccacaaagttatagttcttcatgatgttgacaaggcaccagataat
attcaccacttggtaaaatggataatggactatcattcggattcctgtaagttcatactc
tgctgtgaagatgacatagatatcctagactcagtaacgaatcgctgcaaagttataaaa
gtagatacgccagtaacacatgaaatcatggaggtacttattcagatagcaaggaaagag
gaatttgatctatccatgaattttgctgctaagattgcagccaaatcaaagcaaaacctg
aggaaagcaatcatggctcttgaagcctgcaaagcacacaactatccttttactgacgat
caaccaatcccacttgaatgggaagaggttttgacagaactcgcatcagaaatcctagct
gatccagcacatagaagattatgcattgtgcgaggaaagcttcaaaagcttcttgtggat
tttgttcatcctaaactgatcctccagaagctggtagaacaatttcttaatcacgttgaa
gctggtttaaaaagggaactctattattggcacgcttactatgacaagaggctaccaaca
ggaacaagtgctctgttgaaattagaagagtttgtggccaagtttatggggatatatagg
aagagttggtacaatcgtcagtgtgtgtaa
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