Gossypium arboreum (tree cotton): 108477666
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Entry
108477666 CDS
T05776
Name
(RefSeq) LOW QUALITY PROTEIN: exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Module
gab_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108477666
Enzymes [BR:
gab01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108477666
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108477666
NCBI-ProteinID:
XP_052878569
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Position
12:1704620..1706922
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AA seq
419 aa
AA seq
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MSLDPFKLLLLFSSFSFTGVPAGATTAGLGSQHAQLLPYNNQRTSHFFNVKTFGAQADGL
TDDTKAFLSVWNKACQATGEVDIMIPKGTYLVGPLKFAGPCXNVSKIIVHMKGYLKATTN
LFKYGDGAGWVEFRWIEGLTLTGGGTFDGQGAKAWPYNSCSTDFNCKLLPTNVKFLAMNR
TIVRGITSVNSKFFHMALVECKNFKGSKIKISAPADSPNTDGIHIQRSSGVYFSRSLIGT
GDDCISIGQGNSQVTITSISCGPGHGISVGSLGRYKDEGDVSGLVVRDCTMIGTSNGIRI
KTWANSPGRSAATNMTFENINMENVTNPIIIDQAYCPFASCTPMGPSQVKLSDIYFKKIK
GTSLSAVAVALECSKGIPCQDIYLEDVHLELATGEKQVTSTCKNVRAKYIGTQIPPPCA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgaccccttcaaattactcttgctcttttcctcctttagcttcactggtgtt
cctgcaggagcaacaacagcaggtttaggatctcaacatgcccaactgctaccatataac
aaccaaagaacctctcatttttttaatgtcaagacatttggtgctcaagccgatggactc
actgatgacaccaaagccttcctatcagtatggaacaaagcatgtcaggctactggtgag
gtagatattatgattcccaaaggcacatatttggttggtccacttaaatttgcaggcccc
tgcngaaatgtgtctaaaataatagtccatatgaagggttatctcaaggcaacaacaaac
ttgtttaaatacggagatggtgctggttgggttgaatttcgatggatagaagggctaacc
ttgactggaggagggacctttgatggtcagggtgccaaagcttggccttacaatagctgc
tccacagacttcaattgcaaacttcttccaactaatgtgaagtttttggcgatgaatcgg
acgattgtaagaggcataacatcagtaaacagcaagttcttccatatggctcttgtcgaa
tgcaagaacttcaagggcagcaaaatcaagatttcagcaccagcagatagccctaacact
gatggtatccacattcagcggagctccggtgtctacttttcgcgatcacttataggtaca
ggtgatgattgcatctcaataggtcaagggaattctcaagtcaccataacaagtatcagc
tgcggaccgggtcatggcatcagcgtcggaagtctcggaagatacaaggatgaaggtgat
gtaagtggtttggtggttagagattgcaccatgatagggacctcaaatggcattaggatc
aaaacatgggccaactcgcctggcagaagcgcagcaaccaacatgacattcgaaaacatt
aacatggaaaacgtgaccaatccaattattatcgatcaagcatattgtccatttgcatct
tgcacaccaatgggaccatctcaagtgaaactgagtgacatttatttcaagaaaataaag
ggaacgtcgttatctgcagtggccgtagcactagaatgtagcaaagggattccttgccag
gatatttaccttgaagatgttcacttggagttggcaactggggagaaacaagtcacttcc
acttgtaaaaatgttagggctaaatacattggcacccaaatcccaccaccatgtgcttag
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