Gossypium arboreum (tree cotton): 108478007
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Entry
108478007 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108478007
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
gab03015
mRNA surveillance pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108478007
09122 Translation
03013 Nucleocytoplasmic transport
108478007
03015 mRNA surveillance pathway
108478007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108478007
03041 Spliceosome [BR:
gab03041
]
108478007
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108478007
Spliceosome [BR:
gab03041
]
Complex C
Other components
EJC/TREX
108478007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
108478007
NCBI-ProteinID:
XP_017635941
UniProt:
A0ABR0MRY3
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Position
12:complement(78198023..78202424)
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AA seq
538 aa
AA seq
DB search
MSSKHEILDNRPIDKWKVIELKEELKRRKLTTRGLKKDLVKRLDEAIRAERENNTANEAD
NGFNYDEGVEKAMPSIVEKVEDDGGSGLKLKDDVIDCATASGHGVVQTEITLAHTLVTEV
PVVGQNLQISKLEENVNSNIQVENDGPKLEVERDDPKAQLGNEVGMRASSALNNQVSEIN
TISTDSVSGNEKIELKDTVIDDNAKQSLDVLPMDDEQPLENKASVDERDDKNDTTTNISS
KNDSGEMWYSEKLNLDRSSADESMEEDLLETKQIDPKCTSDEIGENSVENEEGMPVVVRD
GSSTDRKDVFVVPAEKRKFYDDEAIGNIEATKRHKWNSDNLQVVVQQATNHTVTNNTSED
SPGERLVPPSQKPPSTSLRVDNFLRPFTLKAVQQLLGKTGIITSFWMDHIKTHCYVTYLS
VEEAIETRNAIYNLQWPPNGGRLLVAEFVDPHEVENRVESPPPTTTVTDNCGCTAHQQQV
SEQQPLSPPPPEEPDSPMLTLDDLFRKTKATPKIYYLPLSEEQVAAKQATHYRHTKHW
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaagcacgaaatacttgataatcgaccaattgataaatggaaggttatagag
ttgaaagaagaactcaagagacggaagttgacaactcgaggcttaaaaaaggacttggta
aaacggttagatgaagctattagggcagaaagggaaaacaatactgcaaatgaggcagat
aatggttttaattatgatgaaggggtcgagaaagcaatgccaagtattgtagagaaagtt
gaagatgatggtggtagtgggttgaagttgaaggatgatgttattgattgtgcgactgct
tcgggtcatggagtagttcagactgaaataacacttgcccacactctggtaacggaggta
ccagtggttggacaaaatttgcagatctcgaaactagaagaaaatgtgaattctaacatc
caagtggagaatgatggtccgaagcttgaggtggagagggatgatcccaaggctcagctg
gggaatgaggttggcatgcgtgcctcttctgctttgaacaatcaggtatctgagatcaac
actatttctactgattctgtgtcaggtaatgaaaagattgaactaaaggataccgtaatt
gatgataatgcgaaacaaagcctagatgttttaccgatggatgatgaacaaccacttgag
aacaaggcatctgttgatgagagagatgacaagaatgatacaactacaaacataagcagt
aaaaatgacagtggagagatgtggtactctgagaaattaaatttagatagaagttctgcc
gatgaatcaatggaggaagatttgcttgaaactaagcaaattgatccaaaatgtacttct
gatgaaataggagaaaatagtgtggaaaatgaggagggaatgcctgttgttgtacgagat
ggttcatctacagacagaaaggacgtctttgttgttcctgctgagaaaagaaagttttat
gatgatgaagctattgggaacattgaggctacgaaaagacataaatggaactctgataat
ttacaagttgtagtgcagcaagccactaatcatacagtgaccaacaacactagtgaagat
tcacccggagaacgacttgttccaccttcacaaaaacctccgagcacttcacttagagtt
gataattttcttcggccttttaccttgaaagcggtgcaacaacttttaggcaaaactggg
ataattacaagcttctggatggaccacattaagacccattgttatgttacatatttatct
gtggaagaagcaatagagacacgaaatgccatttataacctgcaatggccacctaatggg
ggtcgtctgttggtggctgaatttgttgatcctcatgaagttgaaaatcgggtggaaagt
ccaccaccaactacaactgtcaccgacaactgtggttgtactgctcatcaacaacaggtt
tctgaacagcagcctctttcaccacctcctccagaggaaccggattctcctatgctaacc
cttgatgacctatttcgaaaaaccaaagcaactcctaagatctattatttgcctctgtca
gaagaacaagttgctgcaaagcaagctacacattacagacacaccaaacactggtga
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