Gossypium arboreum (tree cotton): 108478196
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Entry
108478196 CDS
T05776
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
KO
K07466
replication factor A1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03030
DNA replication
gab03420
Nucleotide excision repair
gab03430
Mismatch repair
gab03440
Homologous recombination
gab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108478196
03420 Nucleotide excision repair
108478196
03430 Mismatch repair
108478196
03440 Homologous recombination
108478196
03460 Fanconi anemia pathway
108478196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gab03000
]
108478196
03032 DNA replication proteins [BR:
gab03032
]
108478196
03400 DNA repair and recombination proteins [BR:
gab03400
]
108478196
Transcription factors [BR:
gab03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108478196
DNA replication proteins [BR:
gab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108478196
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108478196
MMR (mismatch excision repair)
108478196
DSBR (double strand breaks repair)
HR (homologous recombination)
108478196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
RADX
zf-CCHC_3
zf-CCHC_2
DUF223
zf-CCHC_4
DUF936
Motif
Other DBs
NCBI-GeneID:
108478196
NCBI-ProteinID:
XP_017636117
LinkDB
All DBs
Position
12:112751735..112755710
Genome browser
AA seq
858 aa
AA seq
DB search
MEVNLTGGAVARIINREVSTERDLKPLLQVIELKEVQTTSKNPQQQQQQQEPKKSERYRL
LLSDGSLTQQGMLATSKNELVKSSKLQIGSVIQLTQYICNVIQDRMIVIIIELDVIVEKC
DIIGKPVAAPRSSRLTQAPTDQSGTVMAQSNSLGGSSVAGGMADRLNSTGTTLQQPRMNQ
WHGNSRSNESDQINYPAANAPPSYPKADPSAGFPGSSPLDRPYGVQSTGFHNPRPATSRP
LSTSNYQSVPTYQQPSPMYTNRGPVAKNEAPPRIIPISALNPYQGRWTIKARVTAKGELR
RYNNARGEGKVFSFDLLDSDGGEIRVTCFNTVVDQFYNQIETGKIYLISRGSLKPAQKAF
NHLNNEHEILLDSTSTIQPCYEDDNRIPRQQFHFRTISDIEGMENNSIVDIIGVVSFISP
AASIMRKNGIETQKRTLHLKDMSGRSVELTLWGSLCNAEGQKLQSLCDSGEFPVLAVKAG
RVNDFNGKAVGSISSTQLFIDPDFPEAHSLKNWFVTDGRNTPTVSISRETSSVSRTDNRK
TLSQIKDEKLGTSEKPDWITVAARIAYIKLDNFCYTACPIMNGDRQCNKKVTNNGDGKWW
CDKCDRSVDECDYRYIIQLQIQDHTGIIWVTAFQESGQDIMGVPAKDLYYLRYENQDDEK
FMEITRRVMFNKYIFKLKVKEETFSDEQRVKSTVVKVEKVNFSSEARYLLDLIDKIKAND
SGLFAPKTEFTTPNTGLDYTGVGIDGRRDLAPPTASREYGLPVNQGGQYGNHYGGSGLRE
SASNMDIFCNSCGVTGHSSTNCPTIMNGPVQSIGRGYSDRVFSGASVGGASSECFKCHQT
GHWARDCPNSGRLPPLRH
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaaatctgacgggaggggcggtggctcgtattataaacagagaggtgtcgaca
gagagggatttgaaacctttgcttcaagtcatagagttgaaagaggttcaaacgacgtcg
aagaatccgcagcagcagcagcagcagcaagaaccgaaaaagagcgagaggtataggcta
ttgctgtcggatgggtcgttgacgcagcaagggatgctcgctaccagtaagaatgaactt
gtgaaatcctcgaagttgcaaattggctccgttattcaattgactcagtacatttgcaac
gtaatccaagatcgcatgattgttattatcattgagttggatgtgatagttgaaaaatgt
gatattattgggaagcctgtagcagcaccaagatcttctaggctaacacaagcccctact
gatcaatctgggacggtgatggcacagagcaattcattagggggaagctcagttgctggc
ggcatggctgataggctgaactcaactgggaccactctgcaacagcctagaatgaatcaa
tggcatggtaattctcgttcaaatgaatctgatcagataaactatcctgctgcaaatgca
ccaccctcttatcccaaagcagatccttctgctggttttcctggatcatcacctctagat
agaccatatggtgttcagagtacgggtttccataatcctaggccagcaacttcacgtcct
ctaagcacctctaactaccaatccgtacctacgtatcaacagccatccccaatgtacact
aaccgagggcctgttgccaagaatgaggcaccacccaggataatcccaatttctgctctg
aacccatatcagggccggtggacaataaaagccagagtaacagcaaagggagagcttagg
cgctataacaatgcacgtggtgaaggaaaagttttctcgtttgacctccttgattctgat
ggtggagaaatacgggtgacctgctttaatactgtggttgaccaattctataaccagatt
gaaactggtaagatatatttgatttctaggggaagtctaaaacccgctcagaaggcattt
aatcaccttaataatgagcatgaaatacttcttgatagcacatcaacgatacagccatgt
tatgaggatgacaacagaattccacgacagcaatttcatttccgtaccataagtgatatt
gaaggtatggagaacaatagtattgtggatataattggtgtggtgtcatttatcagtcct
gctgcttcaataatgagaaaaaatggtattgaaactcagaagagaacccttcatttgaag
gacatgtctggccgaagcgttgagttaactttatggggatctttatgcaatgctgaagga
caaaagctccaatctttgtgtgattctggggagtttccagttctggctgtgaaagctggt
agggtgaatgattttaatgggaaggcagtgggttctatctcttcaacccagttatttata
gatcctgattttcctgaggctcatagtttaaagaattggtttgtcactgatgggaggaac
actcctactgtctctatatccagggaaacgtcaagtgtgagtagaacagataatagaaaa
actttatcacaaatcaaagatgagaagctcggaacttctgagaaaccagattggattaca
gtggcagcaaggattgcatacatcaagttggacaatttctgctatacagcttgtcccatc
atgaatggggatcgtcaatgcaacaaaaaggttacaaataatggagatgggaagtggtgg
tgtgataaatgtgataggtcagtagatgaatgtgactacaggtatataattcagttgcag
atacaggatcatacaggcataatatgggtgactgcttttcaggaatctggtcaggatatc
atgggggtgcctgcaaaagatttgtactatctgaggtatgaaaaccaagatgatgaaaaa
tttatggaaatcactcgtcgagttatgtttaataaatacatattcaagttaaaggtaaag
gaggaaacttttagtgatgaacagcgtgtgaaatcaacagtggtgaaagtagaaaaagta
aatttttcgtcggaagcgaggtaccttttggatttgattgataagattaaagcaaatgat
tcaggtctttttgcaccaaagacagagtttaccactcccaatactggactggattacacc
ggagttgggattgatggaaggagggatcttgcaccaccaactgctagtagagaatatgga
ttaccagtaaaccaagggggtcaatatggaaaccattatggtggttctgggcttagagaa
tctgcttcgaacatggatatattctgtaatagttgtggggttacaggtcatagctctaca
aattgtcctaccatcatgaatggtccagtacagtccattggtaggggctattctgataga
gtattttctggggcaagtgttggtggtgcctcaagtgagtgctttaaatgtcatcaaact
ggacattgggccagagactgcccaaactctggacgtttacctccattgaggcactga
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