Gossypium arboreum (tree cotton): 108478324
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Entry
108478324 CDS
T05776
Name
(RefSeq) sm-like protein LSM8 isoform X1
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108478324
09123 Folding, sorting and degradation
03018 RNA degradation
108478324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108478324
03041 Spliceosome [BR:
gab03041
]
108478324
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108478324
mRNA degradation factors
5'-3' decay
Lsm complex
108478324
Spliceosome [BR:
gab03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108478324
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
Motif
Other DBs
NCBI-GeneID:
108478324
NCBI-ProteinID:
XP_017636262
UniProt:
A0A0B0MWQ3
A0ABR0QZJ4
LinkDB
All DBs
Position
11:123418505..123421645
Genome browser
AA seq
98 aa
AA seq
DB search
MSTGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDSALDLSNLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactggccctgggctcgagtctcttgtagatcagactatctcggtcattaccaat
gacggacgtaacatagtgggagttttaaaaggctttgatcaggctacaaatatcattctc
gatgaatctcatgaacgcgtatactccaccaaggaaggtgttcagcaacttgtgttgggc
ttgtacataataagaggtgacaacataagtgttgttggtgaactggatgaagagctggat
tctgcactcgacttgtcgaacctgagagcacatcctttgaagccagttatccattga
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integrated database retrieval system