Gossypium arboreum (tree cotton): 108478593
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Entry
108478593 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108478593
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108478593
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108478593
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Y_Y_Y
RhgB_N
Motif
Other DBs
NCBI-GeneID:
108478593
NCBI-ProteinID:
XP_017636546
UniProt:
A0A0B0N093
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Position
12:53398663..53403865
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AA seq
623 aa
AA seq
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MEDNRVFIDNGLVEVTIENPSGHLSGITYKGMLNVLETRNNNNNKGYWDIVWDNEAYDKL
ATQHVKIITETDELVELSFTKMWDITKDHGNSVPLNVDKRYIVRRGVPGLYMYGILERQE
DFPDAHMYQIRIAFKLNEDKFHFMAISDTKQRIMPSQEDRDESRSQVLAFKEAVLLTNPT
NPQLKGEVDDKYQYSSENKDNKVHGWISDDDAVGFWVITPSNEFRTGGPHKQDLTSHVGP
TALSMFVSTHYTGTEMDVLYKKGETWKKVLGPVFMYLNSASWDEARHYRKALWNDANRQL
REEIQSWPYNFTVSEDFPHAQQRGEVNGQLLVRDQSLDKQLMQAKSAFVGLAAPGYAGSW
QTEGKGYQFWTQTGNTGRFTIKNVRPGEYNFYAWVYGFIGNYKLNLKITIQPGNKINLGT
LIYDPPRNGPTLWEIGIPDRTAAEFFIPEPNPTFVNSILNHDADKFRQYGLWDRYSDIYR
DGDLVFTVGVSNYSKDWFFAHVPRRIGNETRATTWQIKYELQEVNKAGNYTLQLALAAAS
YAEVQVRINNPDANLPHFTTERIGYDNAVPRHGIHGLYRLYSINVPGNRFQRGNNTIFLT
QTRCHDSFEAVMYDYIRFEGPAV
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggaagataacagagtttttattgataatggacttgttgaggtaactatagagaatcct
tctggtcatttatcaggaattacatataagggaatgcttaatgtgcttgaaaccagaaac
aataacaacaacaaagggtattgggacattgtctgggataatgaagcctatgacaaatta
gctacacaacacgtcaagatcattacagaaactgacgagttagttgagctttccttcacc
aaaatgtgggacataacaaaagaccatggcaattcagttcctttaaacgtagataaaagg
tatatagtacgacgaggcgttccaggcttgtatatgtatggtattttggagcggcaagaa
gattttcccgatgctcatatgtatcaaataaggatagcttttaagctcaatgaagacaag
tttcatttcatggcgatatcagacacaaaacaaaggattatgcctagccaagaagatcga
gatgagagtcgcagtcaagttctagctttcaaagaagctgttctgttgacgaatccaacc
aatccacaacttaaaggagaggttgacgacaagtaccaatattcgagtgagaacaaagat
aacaaggttcatgggtggatatcggatgatgatgctgtcggtttctgggtgatcacccct
agcaatgagttccgaactggtggcccgcacaagcaggacctcacttctcatgttggtccc
acagccctctccatgtttgttagtactcattatacggggacggagatggacgtattgtat
aagaaaggagagacttggaaaaaggttttgggccctgtttttatgtatctcaactcggca
tcttgggatgaagctcgtcattatcgcaaggcgctgtggaatgatgctaatagacagttg
cgtgaagaaatccaaagttggccttacaatttcactgtgtcagaagattttcctcatgct
caacaacgaggagaagttaatggtcaattgctagtgcgagatcaaagcttggataagcaa
ctaatgcaggcgaaatctgcgtttgtggggttggcagcgcctggatatgcaggatcatgg
caaacggaaggaaagggctaccagttttggactcaaacaggcaacactggccgtttcact
ataaaaaatgtccgaccaggggagtataatttttatgcatgggtctatggtttcattgga
aactataaattaaatctcaaaatcactatccaaccaggaaacaagatcaacttgggtacc
cttatatacgatcccccaagaaatggccctacattgtgggaaatagggattcccgacaga
acagctgctgagttcttcatacctgaaccaaacccaacatttgttaactcaatcctcaac
catgacgccgacaaatttagacaatacggattgtgggatcggtactcagatatttatcgt
gacggtgatcttgtctttacagttggtgttagcaattattctaaggattggttctttgct
catgttcccaggcgcataggaaacgagacaagggcaaccacatggcagattaaatacgaa
ctccaggaagtgaacaaggcaggaaattacacgctccaactggccttggcagcagcttcc
tatgctgaagttcaggtccgaatcaacaatcccgatgctaatctacctcattttacgacg
gagagaatcgggtacgataatgctgtgccaagacatggaattcatggattgtacagattg
tatagtataaatgtgcctggaaatcgatttcagagagggaataatacgatctttctaact
cagacaagatgccatgattcattcgaagcagttatgtatgactatattcggtttgaagga
cctgctgtttaa
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