KEGG   Gossypium arboreum (tree cotton): 108479188
Entry
108479188         CDS       T05776                                 
Name
(RefSeq) uncharacterized protein LOC108479188
  KO
K12828  splicing factor 3B subunit 1
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108479188
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gab03041]
    108479188
   03036 Chromosome and associated proteins [BR:gab03036]
    108479188
Spliceosome [BR:gab03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108479188
 Complex B
    108479188
 Complex C
   U2 SnRNP specific factors
    108479188
Chromosome and associated proteins [BR:gab03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    108479188
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N
Other DBs
NCBI-GeneID: 108479188
NCBI-ProteinID: XP_017637128
LinkDB
Position
12:2080731..2085025
AA seq 1269 aa
MDIDNEIAKTQEERRRKEEELASLTSLTFDRDLYGGTDRNAYVTSIPVNDEDDANLDSMD
SEVARKLASYTAPKSLLKEMPRGEDEDNALGFRKPAKIIDREDEYRRRRLNQVISPDRHD
AFAAGEKTPDPSVRTYADVMREQALAREKEETLRAIAKKKKEEEEAAKVEKESGGAAAAV
PKRRNRWDQSQDDGSAAAKKAKTTSDWDLPDATPGIGRWDATPTPGRVSDATPSVGRRNR
WDETPTPGRLADSDATPAGGVTPGATPAGVTWDATPKGLVTPTPKRQRSRWDETPATMGS
ATPMAGATPAVPLTPGVTPFGGTDLQTPTPSNLRGPMTPEQYNLLRWEKDIEERNRPLTD
EELDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPMGTPLYAIPEENRGQQFDVPKEA
PGGLPFMKPEDYQYFGSLLNEENEEELTPEEQKERKIMKLLLKVKNGTPPQRKTALRQLT
DKAREFGANALFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEP
LLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALG
IPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLKSLVEIIEHGLNDENQK
VRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAI
YASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRNDILPEFFRNFWV
RRMALDRRNYRQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLG
ASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWR
LNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKA
IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRIC
FELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIV
AETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMD
RDLVHRQTAASAVKHMALGVAGLGCEDALVHLMNYVWPNIFETSPHVINAVMEAIEGMRV
ALGAAIVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVAAYPILEDEQSSEQNNIY
SRPELMMFV
NT seq 3810 nt   +upstreamnt  +downstreamnt
atggatattgataacgagatcgccaaaacccaagaggagcgaagaagaaaggaggaggaa
ctcgcctcgcttacctccctcactttcgaccgtgatctttacggcggaacagacaggaat
gcttacgttacttctatccctgtcaacgatgaagacgatgccaatcttgattccatggat
tccgaggttgctcggaagctcgcttcttacacggctcctaaatcactcctcaaagagatg
cctcgcggtgaagatgaggataacgcgctggggtttaggaagccagcgaaaattattgac
cgtgaagatgagtataggaggaggaggttgaaccaagttatttctcctgatagacacgat
gcgtttgccgccggggagaagaccccggatccctctgtgaggacttacgcggatgtaatg
agagagcaggcgctggcgagggagaaggaagagactttgagagctatagcgaagaagaag
aaggaggaagaggaggctgctaaggtagagaaagagagcggtggggcagctgctgcggtg
cctaagaggaggaatagatgggaccagtctcaagatgacggtagtgctgcagcaaagaag
gctaaaacgacgtcagattgggatttgcctgatgctactcctggtattgggcgttgggat
gctactcctacgccagggagagtttctgatgccaccccatcagttgggaggaggaataga
tgggatgagacaccaacacctgggcgtttggctgattcagatgcaaccccagcaggtgga
gttactccaggggccaccccagctggggttacatgggatgctactccaaagggattggtt
actcccacgccgaaacggcagagatctaggtgggatgagactcctgcaaccatgggaagt
gcgactccgatggcaggggctacaccagcggttcctcttacacctggggttactcctttt
ggtggtactgatttgcagacaccaaccccaagtaatcttcgtgggcctatgactcctgag
cagtataatttgttgaggtgggagaaggatattgaggagaggaataggccattgactgat
gaggagcttgatgctatgttcccacaagaaggttataagattttggagccgcctgcttct
tatgtgcctattaggacacctgctcgaaagcttcttgctactccaactcctatgggaact
ccactttatgctattcctgaggagaatcgtgggcagcagtttgatgtgcctaaggaggca
cctggtggattgccatttatgaagccggaggattatcagtattttgggtcattgttgaat
gaggaaaatgaggaggaattgacaccagaagagcagaaggaacggaagattatgaaactt
ctgttgaaggtaaagaatggaacaccgccacaaaggaaaactgctttgaggcagctcact
gataaggcaagggaatttggtgctaatgcattgtttaacaggattcttccgttgcttatg
caacctacattggaagatcaagagaggcatctcttggttaaggttattgacagggttcta
tataaattggatgagttggttaggccttatgtgcacaagattcttgttgttattgaaccc
ttgttgattgatgaagattattatgctcgtgtggaaggtagagagatcatttctaatctc
agtaaggcagctggtttggctactatgattgctgcaatgcgtcctgatattgacaacatt
gatgaatatgttaggaatactactgctagagcatttagtgttgttgcttctgctcttggg
attcctgcacttctaccatttttaaaagctgtgtgtcagagtaagaagtcatggcaagct
aggcatactgggatcaagattgttcagcagattgctattttgattggttgtgctgttctt
cctcacttgaagtctctagtagaaatcatagaacatggtttgaatgatgagaatcagaag
gtgaggacaatcactgctttatctttggctgctcttgctgaggctgctgccccttatggt
attgagagctttgactcagttttaaaacctttgtggaaaggtatcaggtctcaccggggt
aaagtattggctgcttttttaaaggccattggttttatcattcctttgatggatgcaatt
tatgctagttactatacgaaagaagttatgtttatacttatccgagaattccagtctcct
gatgaagaaatgaagaaaattgtgctaaaggttgtcaagcaatgtgttagcacagaaggt
gtcgaagctgagtatattaggaatgatatcctacctgagttctttaggaatttctgggtg
agaaggatggctttagataggagaaattataggcagcttgtcgagacaactgttgagatg
gcaaataaagtaggtgttgctgatattgtagggagaatagtagaggatcttaaggatgag
agtgaaccttacaggcgtatggtaatggaaacaattgagaaggtggttgcaaacttgggt
gcatctgacattgatgccaggttggaggaactcttgattgatggtattctttatgctttc
caagagcagaccagtgatgatgctaatgtaatgcttaatggttttggtgctgttgtgaat
tcacttgggcagagagtgaagccttatcttccccagatctgtggtacaataaaatggcgc
ttgaataacaagagtgccaaggtcaggcagcaagcagctgatcttatttcaagaattgca
gtggttatgaaacagtgtcaagaggaacaattgatgggccatctaggggttgttctatat
gagtacctgggtgaggagtaccctgaagtattgggatctattttaggtgccctcaaggca
attgtcaatgtcattggtatgactaaaatgacccctccaatcaaggatttgcttccaagg
ttgacaccgattctgaaaaatagacatgagaaggtccaggagaactgtattgatcttgtt
ggccgtatcgctgatcgaggtgcagagtttgtaccagctagggagtggatgaggatttgt
tttgagcttctcgagatgcttaaagctcacaagaagggtattcgaagagctactgtcaat
acctttggatatattgctaaagccattggcccacaagatgtcctggcaactctattgaac
aatctcaaagtgcaggaacgccagaaccgtgtttgcacaactgtggctattgcaattgtt
gctgaaacatgttcaccttttacagttttgccagcattgatgaatgagtaccgcgtgcca
gaacttaatgtgcagaatggtgtcttgaagtctctttccttcctttttgagtatattggt
gaaatgggaaaggattacatctatgctgtgactccattacttgaggatgctcttatggat
agagatttggttcacaggcaaactgcagcttcagctgtcaagcacatggctttgggtgtt
gctgggttaggttgtgaggatgctttagtccacttgatgaactatgtctggcccaacata
tttgagacttcacctcacgtaatcaatgctgtaatggaagccatcgaagggatgagggta
gccttaggtgctgcaattgtgctgaactactgtctccagggactcttccatcctgctcgt
aaggttagggaagtgtattggaagatttataattcactttatattggatcccaagatgct
ctagttgcagcgtatcctattctagaggacgagcagagtagcgagcagaacaacatatat
agtaggcccgagttaatgatgttcgtataa

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