Gossypium arboreum (tree cotton): 108479213
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Entry
108479213 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108479213
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
gab03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108479213
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108479213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108479213
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
108479213
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
108479213
NCBI-ProteinID:
XP_017637166
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All DBs
Position
12:108915765..108925229
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AA seq
711 aa
AA seq
DB search
MDEGKGGDRMDQFHRNEAISAVADESFLGEEDDDYEDLYNDVNVGEGFLQSLRRNEDLGF
RNEETKNSSNNNNGGKVGGSPMCAPESGVLIPGVAGVGEREDSRVSYESQGFRAGDGDVK
GPSAGFGGGGGGLRVELAQGSNKLNEVAAEQSGNKSSSLGSVGGVGHQGHGVGNVGSVEN
EGLVRQGVGGPSVNGPGGSGGGSGSIGGGAMVGNGGGNVGVSGVGAGAGAGVGPGVGASG
GAGGGTILFVGDLHWWTTDAELESELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPAAA
TACKEGMNGHMFNGRPCVVAFASPFTVKKMGEAQLNRNQQMAQSALSQARRGPNDAGGKT
GAANIQTGGNYQGGDNNRGYGRGNWGRGNTQGMGNRVPVGPMRNRGGMGGRGIMGNGGNG
FGQGMGATPPLMHPQSMMGQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPPVGGV
GLPGVAPHVNPAFFGRGMPMNGMGMMPSSGVDGPNMGMWADPSMGGWGGDEHGGGRAGES
SYGEEAASDHQYGEVSHERGGWQNPSKEKDRASEREWSGSSERRYRDDREPGYDRDIPRE
KDMGHGHDWPERRHRDDRDIGRERDRERSRDRDRDRDRERDRDRDRDRYREDRDRYADHR
RYRDREPEHDDDWDRGRSSRTHSKSRLSQEDEHRSRSRDADYGKRPRLTSE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagggaagggaggggatcggatggatcagtttcatagaaacgaagcaatctca
gccgttgctgacgagagttttttaggtgaagaagacgatgattatgaagacctttacaat
gatgttaatgttggtgaagggtttcttcaatctttaagaagaaacgaagatttagggttt
agaaacgaggaaactaagaatagttccaataataataatggtgggaaagttggtggatca
ccaatgtgcgccccagaatctggtgttttaattccaggggttgcaggtgttggtgaaaga
gaggattctagggtttcttatgagagtcaagggtttagggctggtgatggtgatgtcaaa
ggacctagtgcgggttttggtggtggtggaggtggccttagggttgaattagcacagggg
tcgaataaattgaatgaggtggctgcagagcaaagtgggaataagagtagtagtttaggt
agtgtaggtggtgtgggacatcagggacatggtgtagggaatgtagggagtgttgagaat
gagggtttggtcagacaaggagtaggaggtccaagtgtgaatggccctggtggcagtggc
ggtggcagtggcagcattggtggcggtgctatggttgggaatggaggcggaaatgtgggt
gtttctggtgttggtgctggtgctggtgctggtgttggccctggagttggtgcaagtggt
ggtgcaggtggtgggacaatattgtttgttggagatttgcattggtggacaacagatgct
gaactggagtctgagttgtgcaagtatggacctgtgaaggaagtgaagtttttcgatgag
aaagctagtgggaagtcaaaagggtattgtcaggttgagttttatgatccagcagcagca
acagcttgtaaggagggaatgaatgggcatatgtttaatggaaggccttgtgttgttgcc
tttgcatcgccgtttacggttaagaaaatgggagaggctcagttaaataggaatcagcag
atggcacagtctgctctttcgcaagccaggaggggccccaatgatgctggaggtaagact
ggtgctgctaatattcaaactggtgggaattatcaaggtggggataataatagaggttat
gggagagggaattgggggagaggaaatactcaggggatgggaaatagagtgccagttggt
cctatgaggaataggggtggaatgggtggtagaggtatcatgggaaatggtggaaatgga
tttgggcagggcatgggtgcaacacctcctctcatgcacccacagtcgatgatgggtcaa
ggttttgatcctgcttttggtggacccatgggaagaatgggcagttatggaggttttcct
ggtgctccaacgccaccattttcagggattttaccttcatttcctcccgttggaggagtt
ggtttgcctggagtggctcctcatgttaaccctgcattttttggaagaggtatgcctatg
aatggtatggggatgatgccctcgagtggtgtagatggacctaatatgggaatgtgggcg
gatcctagcatgggaggatggggtggtgatgagcatggtggtgggagagctggagagtca
agttatggggaggaagctgcatccgaccatcaatatggtgaggttagtcatgagagagga
ggttggcaaaacccatctaaagaaaaagatagagcttctgaaagggagtggtctggttca
tctgaaagaaggtaccgtgatgatagggaaccaggatatgatagggacatacctagggag
aaggacatgggccatggtcatgattggccagaaagaaggcaccgagatgatagagacatt
ggtcgagaacgtgatagagagcgctctagagatcgtgaccgtgatcgtgatagggagcgt
gatcgagatagggatagggatcgatatagggaagacagagacagatatgcagatcatcgt
aggtacagggaccgtgagccagagcatgatgatgattgggacaggggacggtcatcacgg
actcacagcaagtcccgattgtcacaagaagatgagcatcgctcaagatctagagatgct
gattatgggaagaggccacggcttacctcagagtga
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