Gossypium arboreum (tree cotton): 108479245
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Entry
108479245 CDS
T05776
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14 isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gab03400
]
108479245
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108479245
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
108479245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
DEXQc_Suv3
T2SSE
AAA_19
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
108479245
NCBI-ProteinID:
XP_052878407
LinkDB
All DBs
Position
12:complement(109294664..109323378)
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AA seq
2105 aa
AA seq
DB search
MLVQLPRLTNSLREPFDIDQAYLQRKIILETQKKSINSGNSLDELELARKIVHQWEEASV
EVRQVYKQFIGAVVELIDGDVPSEEFREVVLTAYRLFSGSVEVDEVDKNINEKTVELQKV
IGHGVSHANVRKVSSLVQKLSQSQPRDSGAILGSEKHVNGSGDDSEFGADLAFKAPARFL
VDVSLEDVELLGEESIAPSSSFIEGWHDKNGPINYHGNTDSRNFNLSWLRDSCELIVRGS
TSQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLLSHRKELLEAIHHGL
SVLKSEKLTSSSQSRMPSYGTQVTVQTESEKQIDKLRRKEEKRNRRATEYGAENDMSAAS
FSSLLQASEKRSPFEDLIGSGQGSNSVAVTALPLGTVRKHFKGYEEVIITPTPTAQMKPG
EKLIEIKELDDFAQAAFRGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISIL
HEIGQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMCVRELTGDMQLSKNE
LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV
ESTQSMIRIVGLSATLPNYLEVAQFLRVNAETGLFFFDSSYRPVPLAQQYIGISEQNFVA
RNELLNEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAEKLVELARKYEGLELFKNDAHPQ
FSLIKKEVVKSRNKDLVQLFDFGVGVHHAGMLRSDRGLTERLFSDGILRVLVCTATLAWG
VNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAY
YLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGI
GWDEVVADPSLSLKQRALVTDAARALDKAKMMRFDEKNGNFYCTELGRIASHFYIQYSSV
ETYNEMLRRHMSDSEVIEMVAHSSEFENIVVREEEQNELEMLARTSCPLEVRGGPSNKHG
KISILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWCEMTLFMLEYCKA
VDRQIWPHQHPLRQFDKDLSLEILRKLEERGADLDRLHEMEEKDIGALIRYAPGGRLVKQ
YLGYFPWVQLSATVSPITRTVLKVDLLISSDFIWKDRFHGAAQRWWILVEDTENDHIYHS
ELFTLTKKMARAESQKLSFTVPIFEPHPPQYYIRAVSDSWLYAEAFYTISFQNLRLPEAL
TTHTELLDLKPLPVTSLGNSTYESLYSFSHFNPIQTQIFHVLYHTDNNVLLGAPTGSGKT
ISAELAMLHLFNTQPDMKVIYIAPLKAIVRERMHDWRKRLVSQLGKEMVEMTGDYTPDLM
ALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYI
SSQTERAVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLKVHIQGYPGKYYCP
RMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQYEASDENPRQFLSMPEEAL
QMVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFSNNMIQVLVCTSTLAWGVNLP
AHLVIIKGLHFLAADASGSQHEGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA
VILVHEPKKSFYKKFLYEPFPVESSLREQLHDHMNAEIVSGTICHKEDAVHYLTWTYLFR
RLMVNPAYYGLESGEDETLSSYLSRLVQSTFEDLEDSGCIKMTEDSVEPMMLGTIASQYY
LSYMTVSMFGSNIGPDTSPEVFLHILSGASEYDELPVRHNEENYNEALSKRVRYTVDQNR
LDDPHVKANLLFQAHFSQLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLTSSIAC
MHLLQMVMQGLWFDQDSALWMLPCMNNELAGSLCKRGISTVQQLLDLPKATLQTVIGNFP
ASKLYQDLQHFPCIRVKLKLLKKGTESKKSLQLNVRLEKTNLRRNMSRAFAPRFPKIKDE
AWWLILGNTSTAELYALKRVSFSDRLVTHMELPSDVTLIQGMKLIIVSDCYIGYEQEHSI
ENLAA
NT seq
6318 nt
NT seq
+upstream
nt +downstream
nt
atgttggttcagcttcctcggttgacaaattctttaagggaaccgttcgatatcgaccaa
gcttatctccagcgcaagatcatccttgaaacccagaaaaaatctatcaattcaggaaac
tcccttgatgagttagagcttgcaaggaagatagttcatcaatgggaagaagcttctgta
gaagtgagacaagtatacaaacagttcattggggcagtggtggagctgattgatggagat
gtaccttctgaagagttccgtgaggttgtgttgactgcttatcgtctttttagtgggtca
gtggaagtggatgaagttgataaaaacataaatgagaagacggtagaattgcagaaagtt
attggtcatggagtttcacatgctaatgtgcggaaggtgtcctctttggtacagaagcta
tctcagtctcaaccaagagacagtggggccatacttggttctgaaaagcatgtaaatgga
agtggagatgattcagaatttggtgctgaccttgcctttaaagcaccagcccggtttttg
gtggatgtttctttggaggatgtggaattactgggtgaggaaagcattgcaccttcttct
tcatttattgaaggatggcatgataaaaatggccctataaattatcatggcaatactgat
agtagaaacttcaatttaagttggttaagagattcatgtgaactaattgttagagggagt
acttcacaactttcccgagatgacctggctatggcaatctgtcgggtacttgattcagac
aaacctggtgaagagatagctggcgatttattggaccttgtcggggatagcgcatttgaa
actgttcaagaccttttatcgcatcgaaaggagcttcttgaagctattcatcatggatta
tctgtattgaaatctgaaaaattgacttcaagttctcagtcacgcatgcccagctacggg
acccaggtgactgtccaaacagagtctgagaagcagattgataaactgcggcgcaaggag
gaaaagcgtaacagacgtgcaacggaatatggggctgagaatgatatgtcagctgcaagc
ttttcttctttacttcaagcgagtgagaagagaagtccgtttgaagatttgattggatct
ggtcaagggtctaattctgtggcagtaactgcccttccactggggactgtacggaagcat
tttaaggggtatgaggaggtgattataaccccaacaccaactgctcaaatgaaacctgga
gaaaagctgattgagataaaggagttggatgacttcgctcaagctgcttttcggggttac
aaatctctgaatcgtattcagagtcggatattccaaaccgtatatcacactaatgagaat
atattagtttgtgcaccaactggagcaggcaagacaaacatagccatgatatctatccta
catgagattgggcagcatttcaaggatggctacttgcataaagatgaatttaagatcgtt
tatgttgctcctatgaaggcattagctgctgaggtcacatcaacatttagtcaacgctta
tctccattgaatatgtgtgtgagagaacttactggagacatgcaactttctaagaatgaa
cttgaagaaactcagatgatagttacaacacctgagaaatgggatgttattactcgcaaa
agtagtgatatgtcactctcaatgctggtgaagctcttgattattgatgaagtgcatctt
ctaaatgatgatagaggtccagtaatagaagctctagtggctagaactcttcgtcaggtg
gagtcgacacagtcaatgatacgaattgttggcctttcagctactctacctaattactta
gaggttgcacagttccttagagtgaatgcagagactggcctttttttctttgattctagt
tatcgtccagttccgcttgctcaacaatatattggaattagtgagcagaactttgttgcc
cgtaatgaattattgaatgagatatgctataagaaggtggttgattccttaaggcaaggt
caccaggcgatggtgtttgttcattcaaggaaggatactgtcaaaacagctgagaagctg
gttgagcttgctcgaaagtatgagggtcttgagcttttcaagaatgatgcccatccccag
ttctccttaatcaagaaggaagttgttaagtcaagaaacaaagatctagttcagcttttt
gattttggagttggtgtgcatcatgctggtatgttacgttctgatagggggcttactgag
aggcttttctctgatggaatcttgagggtacttgtttgcacagctaccttggcctggggt
gttaatttgcctgctcacacggttgtcatcaaggggactcaattatatgatccaaaggct
ggtgggtggcgagacctgggcatgctagatgttatgcagatatttggaagggcaggtcga
cctcagtttgacaaaagtggtgagggcatcataattacatctcatgacaaactagcctac
tatctgcgattgttgacaagccaacttcctatagaaagtcagtttatcagctcgttgaaa
gataatttaaatgcagaggtagcattgggtactgtaactaatgtcaaggaggcttgcgca
tggcttgggtacacctatctatttatcaggatgaggttgaacccactggcatatggcatc
ggatgggatgaggttgttgcagatccttctttgagtttaaagcaaagagctctagtaaca
gatgctgcacgtgcactagacaaagctaaaatgatgcgttttgatgagaaaaatgggaat
ttctattgtacagagcttggtcgtattgcaagtcacttctatatccaatattctagtgtt
gaaacttacaatgaaatgctcaggcgccatatgagtgacagtgaggtaattgaaatggtt
gcccattcttctgaatttgaaaacattgttgttcgagaagaggagcagaatgagctagag
atgctggcgcgcacatcatgcccattagaagttaggggggggccttcaaacaagcatggg
aaaatttcaattctcattcagctgtacatatcacgtggctccattgattccttttcgttg
gtatctgatgctgcatatataagtgctagtttggctcgcatcatgcgtgctttgtttgaa
atatgcttgcgcagaggctggtgtgagatgacattattcatgttggaatactgcaaggcc
gtggatcgccaaatttggcctcatcaacatccgctcagacaatttgataaagatctttca
ctagaaatattaaggaagcttgaagaacgaggggctgacttggatcgtcttcatgagatg
gaagaaaaagacattggtgcactgattcgttatgcacctggaggaaggttggttaagcaa
tatttaggatatttcccttgggtccagttatcagcgactgtgagtccaataactaggact
gttttaaaggtagatttgcttatatcttctgactttatttggaaagatcgatttcacggt
gctgcacaacgttggtggatacttgttgaggacactgagaatgatcacatctaccactcg
gagctttttacactgacaaagaagatggctagagcagaatctcagaagctttcctttacc
gtaccaatatttgaaccacatcctcctcagtactacattcgtgctgtttctgattcttgg
ttgtatgctgaggctttctacactatatcattccaaaatctaagactgccagaggctctt
accactcatacagagcttcttgatttgaagcctctgcctgtaacttcactcggcaacagc
acttatgaatcattgtatagcttttcacattttaatccgatacaaacgcagatctttcat
gtcctgtatcacacagataacaatgttctattaggagctcctacgggtagcgggaaaact
atatcggctgaacttgctatgctgcacctcttcaatacccaacctgatatgaaggttatc
tacatagcacctttgaaggccattgtacgggaaaggatgcatgattggaggaagcgtctt
gtctctcagcttgggaaagaaatggttgaaatgactggagattatactccagatttgatg
gccctgttgtctgctgatattatcatatctactcctgaaaagtgggatggtattagtcgg
aattggcatagtcgaagctatgtcacaaaggttggacttatgatattggatgagattcac
ttactgggagctgatcgtggacccatactggaggttattgtttcaaggatgagatacata
tcatcacaaacagagcgtgcagtacggtttgttgggctctccacggctttggcaaatgca
ggtgatttggctgattggttgggtgttggtgaaattgggctcttcaactttaaaccaagt
gtgagacctgtacctcttaaagttcatatccagggatatcctggaaagtactactgccca
agaatgaatagtatgaataaaccagcatatgctgcaatatgcacccattcaccgacgaaa
ccagttcttatttttgtttcgtctcggcgtcagacaaggctgactgctttggaccttatt
cagtatgaagcatcagacgaaaatccaaggcaatttttgagtatgccagaagaagctttg
cagatggtactttcccaggttactgatcaaaacctgaggcataccttacagtttggcatt
ggattgcatcatgctggactaaatgacaaagatagatctcttgttgaggagcttttttcc
aacaacatgatccaggttttggtttgtacaagcacattagcttggggtgtaaatcttcca
gcccatttggttattatcaaggggctccactttctggctgctgatgcaagtggatctcag
catgagggaacagagtattatgatgggaaaacaaagaggtatgttgatttccccattaca
gatattttgcaaatgatgggtcgagccggtcgtcctcaatatgatcagcatgggaaggca
gttattcttgttcatgaacccaaaaagagcttttacaaaaagttcctatatgaaccattt
ccagttgagagtagcctgagggagcagttgcatgatcacatgaatgcagagattgtttct
ggaacaatatgtcataaagaagatgctgttcattatcttacttggacctacttgttccgg
agactgatggttaatcctgcatactatggcttggagagtggagaagatgaaacattgagt
tcgtatttgtccagattggtgcaaagcacctttgaggatctagaagatagtgggtgcatc
aaaatgactgaagacagtgtagagcctatgatgttgggaacaatagcatctcagtattac
cttagttacatgactgtatcaatgtttgggtcaaacattggaccagacacgtctcctgaa
gtgttcttgcatattttgtcgggtgcttctgagtatgatgaacttcctgtgcgacataat
gaggaaaactataatgaagcattgtctaagagagtccggtatacggtggatcaaaatcgg
cttgatgatccacatgtcaaagcaaaccttctattccaggcacatttttcccagttagat
ttaccaatcagcgactatgtgactgacttaaagtcagtgttggaccaaagcatacgcatc
attcaagctatgatagatatatgtgccaatagtggatggcttacaagttcgattgcttgc
atgcatctattgcagatggtcatgcagggtttgtggtttgatcaggattcagccctctgg
atgttgccgtgtatgaataatgaacttgctggctcattgtgcaagagaggaatttccacc
gtacagcaactattagatcttcctaaggcaacattgcaaactgtgatcggaaacttccct
gcttcaaaattatatcaggatctgcagcatttcccctgtatacgagtcaaattaaaactg
ctgaagaagggcactgagagcaaaaagtctcttcaactgaacgtcagattggagaagaca
aatttgaggcggaatatgtcaagggcatttgcccctcgtttccctaagattaaagatgaa
gcatggtggctgattcttggtaacaccagtactgctgaactatatgctctgaagagagtt
tctttctccgatcgcttagttacccacatggagttaccatcagatgtgaccttgattcag
gggatgaaactaattatagtttcagattgctatattggttatgagcaagaacactccatt
gaaaatcttgctgcataa
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integrated database retrieval system
