Gossypium arboreum (tree cotton): 108479247
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Entry
108479247 CDS
T05776
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108479247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gab04121
]
108479247
Enzymes [BR:
gab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108479247
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
HECT type E3
108479247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
Arm
ARM_ARMC5
HEAT_EZ
DUF2378
Motif
Other DBs
NCBI-GeneID:
108479247
NCBI-ProteinID:
XP_017637213
UniProt:
A0ABR0MLJ6
LinkDB
All DBs
Position
12:5902077..5911257
Genome browser
AA seq
1905 aa
AA seq
DB search
METRSRKRAEASSAAPSSSPSGPTTRSHKRVRLSSSSAATAATVAVTRSRTSRTSRTSAA
LMDPSTIESSSGSRRDRRSSKANQTTTSDNPNLASDRGKEKEHDPRIRDRDRDRDNRDNN
NSNHPERNLGLNMDTSGGDEDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPS
SAMGSGSSSHQSGRLKKVLSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVP
VLVGLLNHESNPDIMILAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQ
SLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADYVM
EAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNYGLVTQAASLISISNS
GGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSANSSVSPA
LSKPAEQIFEIVNLANELLPPLPQGTISLPASSNIFVKGSILKKSPTSSSGKQEDTNRNA
LEVSPREKLLNDQPELLQQFGVDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI
QNLLSVTNISSFLAGVLAWKDPYVLVPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLV
LIGNQNTTTVQASSLEKDNESVSGASSRSRRYRRRSGNSNLEGSSMEESKNPASLNIGSP
TNSVEIPTANSSLRTAVSACAKAFKDKYFPSDPGAVEVGVTDDLLHLKNLCMKLNAAVND
QKAKAKGKSKASGSPWVDFSTSNEEYLTGVISEMLAELSKGDGVSTFEFIGSGVVAALLN
YFSCGYFSQERISDVHLPKLRQQALKRYKLFISVALPSSVDEGSMAPMTVLVQKLQNALS
SLERFPVVLSHSSRSSSGSARLSSGLGALAQPFKLRLCRAPREKSLRDYSSNIVLIDPLA
SLAAVEEFLWPRVQRSDTSQKLSLTVGNSESGNTPNRTDVSSPSTSTPASTTRRHSSRSR
SSVNIGDVARKKQSQEKSTSSSKGKGKAVLKPSKEEPRGPQTRNAARRRAALDKDAPMKP
VNDDSTSEDEELDMSPVEIDDALVIEDDDISDDEDDEHEDVLRDDSLPVCTPDKVHDVKL
SDSAEDGSPAPAASDSQTNAASGSSSRAAAIRGSDSADFRSGYGSRGAMSFAAAAMAGLG
SANGKGIRGGRDRQGRPPGSSNEPPKLIFTAGNKQLNRHLTIYQAIQRQLVLDEDDDERD
AGSDFTSSDGRGVWSDIYTITYQRAESQADRSSPGGSGSATASKSGKSGSSNSSSDPQPR
RMSLLDSILQGELPCDLDRSNPTYTILALLRVLEGLNQLAPRLRAQIVSDNFAEGNVLTL
DELSTSGSRVPHEEFINGKLTPKLARQIQDVLALCSGSLPSWCYQLTKACPFLFPFETRR
QYFYSTAFGLSRALYRLQQHQGADGQGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVME
MYSSQKTVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLAMWRSNSTWNKTVMEIDGDG
DKNGKSAGSATIDRDIVQAPLGLFPQPWPPNADASEGSQFFKVIEHFRLVGRVMAKALQD
GRLLDLPLSTAFYKLVLGQELDLHDILSFDAEFGKILQELHLLVRRKQYLDSLGGDNSDA
IADLRFRGASIEDLCLDFTLPGYPDYILKLGDETVDINNLEEYISLVVDATVKTGIMHQI
EAFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWEAETLADHIKFDHGYTAKSPPIVNL
LEIMGELTPEQQRAFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSSATAAAAANGTGPSE
SADEDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcggagccggaagcgggcggaggcctcctcagctgccccttcatcttctccc
tccggtcccaccactcgctctcataaacgcgttcgtctctcttcctcctctgccgctacc
gccgccactgtcgctgttactcgctcccgtacttcccgcacatcacgtacttccgctgcc
ttaatggaccccagtacaatcgaatcttcttccggttcccgccgtgatcgccgttccagc
aaagctaaccaaaccacgacaagtgacaatccgaatcttgcctctgatagaggaaaggaa
aaggaacatgatcctaggattcgcgatagagatagagacagggacaatagagacaacaac
aattctaatcatcctgagagaaatttaggattaaatatggatacctctggaggcgatgag
gatgataatgatagcgaaggcggtgtagggattttgcaccagaatctgacgtcagcgagc
agcgcgttacaaggcttgttgaggaagcttggtgctggacttgatgatttgcttccctca
tcggcaatgggttccgggtcttcatctcatcaaagtgggaggttaaaaaaggttctgtct
ggattgcgtgctgatggagaggaagggaggcaagtggaggcgctgacccagctgtgtgaa
atgctttcaattggtactgaggaatcgttgagcacgttttctgttgattcctttgttccc
gtgctcgttggattgcttaatcacgagagtaatcctgatatcatgattcttgctgcaagg
gcgcttactcatttgtgtgatgtgttgccttcttcatgtgctgctgttgtgcattatggt
gctgtttcatgtttttgtgctaggttgctcactatagagtatatggacttggctgaacag
tctctacaagctctgaagaagatatctcaagaacacccaactgcctgtctgcgagctggt
gctctcatggcagtgctttcatacttggatttcttctccactggggttcagcgagtggca
ctatctactgctgcaaatatgtgcaagaaactcccttcagatgcagctgattatgtcatg
gaagctgtaccactattaacaaatcttttgcagtatcatgattcgaaggtgctggagcat
gcatctgtttgtttaacgcgcattgctgaagcctttgcatcttccccggataaattagat
gagctttgcaattatggactggttactcaggctgcatctctcatttccataagtaattct
ggaggtggacaggcatcattgagcacaccaacatatacgggcttaattcggctgctctca
acttgtgcaagtgggtctcccttgggagcaaaaactttacttctgcttgggatcagtggc
atacttaaagatatactatcaggttctggtgtttcggctaactcatctgtttcacccgca
ttaagcaagccggcagagcagatttttgagattgtcaatctggcaaatgagcttcttcct
ccattgccacaaggaaccatctccctccctgctagctctaatatatttgtgaaaggatct
attttgaagaagtctcctactagcagctctgggaagcaagaagacaccaatcgaaatgct
cttgaggtttcaccccgtgagaaactattgaatgatcaacctgaacttcttcagcagttt
ggagtggatctccttcctgttctcattcagatctatggttccagtgtcaatagccctgtt
cgccacaaatgtctctcagttattggaaaactaatgtacttcagcagtgcagagatgatt
cagaatctattaagtgtgacaaatatatctagcttcttggctggtgttttagcatggaaa
gatccatatgtcttggttccttccctgcaaattgctgagatcctcatggaaaagcttcct
ggaactttctccaaaatgtttgttcgagagggcgtggttcatgctgtggaccagcttgtt
ttaattggtaatcaaaataccactactgttcaagcatcttcacttgagaaggataatgag
tctgtatctggagcttcatcacgttctaggcgatacagacgacgtagtggtaactctaat
cttgaaggaagttctatggaggagtccaagaatccagcatctttaaatattggctcacct
actaattcagttgaaattcctacagccaattccagtcttcgtactgcagtaagtgcatgt
gctaaagcatttaaagataagtatttcccctctgatcctggggctgttgaagttggagta
acagatgatctgttacacttaaaaaatctttgcatgaaattgaatgctgctgttaacgat
caaaaggccaaggcaaaaggaaaatctaaagcttcagggtctccatgggttgatttttct
actagcaatgaagagtatttgactggggtgatttctgagatgctagcagaactaagcaag
ggggatggtgtatccacttttgagtttattggtagtggtgttgttgcggccttgttaaac
tatttttcttgcgggtacttctcccaggagagaatttcagatgtgcaccttcccaagctt
cgtcaacaagcccttaagagatacaaattgtttatcagtgttgctcttccttctagtgtt
gatgaaggaagtatggctcctatgactgtcctggttcagaagcttcaaaatgctttatca
tctttagagcgttttcctgtagttcttagccattcatctaggtcatctagtgggagtgca
cgcctctcttctggtttaggtgcattagctcagccttttaagttgcggctctgtcgagcg
ccaagagagaagtctcttcgtgattattcttcgaatattgtgttgattgacccattagca
agtctagcagctgttgaagaatttctttggcctcgagttcaacgaagtgacacttctcag
aaactctctttgactgttggaaattctgagtctgggaacacacctaaccggactgatgta
tcttctccgtctacctcaactcctgcttctaccacccggcgccattcttcaaggtccaga
tcatctgttaatattggagatgtggccagaaagaagcaatcacaggagaaaagcactagt
tcatcaaagggaaaaggtaaggctgttttgaagccttctaaagaggagccaagaggacct
caaacaagaaatgctgctcgtagaagagctgctctggataaagatgctccaatgaaacct
gtaaatgacgactctacttctgaggatgaagaattggatatgtcccctgtggagattgat
gatgctttggtgattgaagatgatgatatttctgatgatgaagatgatgaacatgaagat
gtgcttagggatgattctcttccagtttgtacacctgataaagtacatgatgttaagttg
agtgattcagctgaagatggttcacctgctccagctgcaagtgatagccaaactaatgca
gcttcaggatctagcagcagagctgctgctattaggggttcagactctgctgattttagg
agtggctatggctcaaggggtgcaatgtcgtttgcagctgctgccatggctgggcttgga
tctgccaatggtaaaggtattaggggaggtagagatcgacaaggaagacctcctggcagt
tctaatgagcctccaaagttgatattcactgctggtaataagcagcttaacaggcatttg
accatctatcaggccattcaaagacagcttgtgttggatgaggatgatgatgagagagat
gctggtagtgattttacatctagtgatggaagaggagtgtggagtgatatctacacaata
acatatcagagggctgagagccaagctgatcgatcatcaccagggggatcaggttctgct
acagcatctaaatctggtaaatctggttcatccaattccagctctgatccccaacctcgt
agaatgtctctattagatagcatattgcaaggggaacttccttgtgatctagacagatcc
aatcctacttatactatattggcactgttgcgtgtgttagagggtctgaatcagcttgca
cctcgtttgagagctcagattgtttctgataattttgctgagggaaatgttttaactctg
gatgagttgagcacctccggttctagagttcctcatgaggaatttattaatggtaagctg
actccaaaactggcgcggcaaattcaggatgttcttgctctatgtagtggaagccttcct
tcctggtgttaccagttgacaaaggcatgcccctttttatttccttttgagacacgaagg
cagtacttctattcaactgcctttgggttgtctcgtgcattatatcgtctgcagcagcat
caaggtgctgatggccaagggtcaactaatgaaagagaggtaagggttgggagattacag
aggcagaaagttcgtgtctcccggaaccgcattttggactctgctgcaaaggtgatggag
atgtattccagccaaaaaactgtgcttgaagttgaatattttggagaagttggcaccgga
ttgggtccaaccttggagttttatacgcttttaagtcatgacttgcaaaaggttggactt
gcaatgtggaggtcgaattctacatggaacaagacagtgatggaaattgatggagatgga
gataaaaatggaaaatctgctggttctgctactattgatagagatatagtccaagctcct
ctggggttattcccccaaccttggccaccaaatgctgatgcttctgaaggtagccaattt
tttaaagtaattgaacatttccggctggttgggcgtgtcatggcaaaagctcttcaagat
ggacggcttttagacctgcctctctcaacggcattttataaacttgtgcttggtcaagag
cttgatttgcatgatattctgtcttttgatgccgaatttggcaaaattttgcaagaattg
catttacttgttcgtcgaaagcaatatctagattcattgggtggtgacaatagtgatgca
attgctgacttacggttccgtggagcctcaatagaagatctctgtttggatttcacgctt
ccaggatatccggactacatattgaagctaggggatgaaactgtggatatcaacaactta
gaggaatacatatctttggtggttgatgcaactgtgaagactggaattatgcatcaaata
gaggcatttagagctggtttcaatcaggtttttgatatctcgtcactgcaaatatttaca
ccccaagagttggactatttgctgtgtggtcgcagagagttgtgggaggctgagactctt
gctgatcatataaaattcgatcatggatatactgcgaagagccctccaattgttaatttg
cttgaaattatgggagaactaacaccagagcagcagcgggccttctgtcaatttgttact
ggtgcacccaggcttccacccggtggtctggcagtgctgaatccaaggctgacaattgtt
agaaagcattcttcgtctgcaactgctgctgctgctgccaatggaactggaccctcagaa
tcagcagatgaggacttgcctagtgtcatgacttgtgctaattacttgaagcttcctcca
tattctaccaaggaaattatgtataagaaattgctatatgcaatcaatgaagggcaagga
tcttttgatttgtcatga
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integrated database retrieval system
