Gossypium arboreum (tree cotton): 108479395
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Entry
108479395 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108479395
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108479395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108479395
Membrane trafficking [BR:
gab04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108479395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Clathrin
TPR_VPS8_2
zf_RING_Vps8
Beta-prop_EML
WD40
ANAPC4_WD40
zf-RING_Vps41
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
108479395
NCBI-ProteinID:
XP_017637448
UniProt:
A0A0B0PRU7
LinkDB
All DBs
Position
12:92521092..92531795
Genome browser
AA seq
1932 aa
AA seq
DB search
MEADLDTLLDSHFSDSDDDSNSIVPHRTIDEILNDSDASTSSSSPSSPLSSYQRSDNRLA
RSNTVPQEFVELLEERDALSEGPAESSKTSPFKRIGDPVWRVSSSSSSKQLPTLFGGVKS
NAKPGAALAAAAAASRSVPTPHAAAIKSRRAVSGGVLQRVVGSDDQDVSSVNGESIGVSS
KSSVSGEKLEIDDYTSDNKMGDFQSADTHQNSEASESKDKESEAERVIERIDGSSKLDFD
DSLNKEVTVLGSGEVLDNEIDPVSVSENSLVLDANDSYEKSVLSLPSVDQERNISKDLER
VGLERENVASDMPSYEDGEENASGGDDKSSMSDISELVEERLEQLESEMMSKRVESNARA
TMKPLELAEELEKKQASTGLHWEEGAAAQPMRLEGVRRGSTTLGYFDVDASNIITRTLSS
QAFRRDHGSPQVLAVHLNFIAVGMTKGVIVLVPSKYTTHHADSMDPKMVILGLQGDRSLA
PVTSMCFNQPGDLLLAGYGDGHVTVWDVQRASATKVIAGEHNAPVIHTLFLGQDSQVTRQ
FKAVTGDSKGLVLLHAFSVVPLLNRFSIKTQCLLDGQKTGTVLSASPLLFDGSYGSTSVT
SQGNATSTSSIGSKMGGVVGGDAGWKLFAEGSSMAEEGVVIFVTYQTALVVRLTPTLEVY
AQLSRPDGVREGSMPYTAWTCMAQPCGSSSENSPTETGERTSLLALAWDRKVQVAKLVKS
DLKVYGKWSLDSSAIGLAWLDDQMMVVLTMTGKLNLFARDGTLIHQTSFAVDGLGGDDLI
TYHTHFINIFGNPEKAYHNCVSVRGASVYILGPMHLTVCRLLPWKERIQVLRKAGDWMGA
LNMAMTLYDGQAHGVIDLPRNLDAVQETIMPYLVELLLSYVDEVFSYISVALGNQIGKAE
QPDDQESRNGSVHSEIKEQFTRVGGVAVEFCVHIRRTDILFDEIFSKFVAIQQRDTFLEL
LEPYILKDMLGCLPPEIMQVLVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVILCREHGL
YGALVYLFNKGLDDFRAPLEELLVVLRNSQGEIASGLGYRMLVYLKYCFTGLAFPPGQGT
LPPSRLLSLRTELLQFLLEVSDRQDKKSASTSAFEGAYLNLYYLLELDTEATLDVLKCAF
IEEISPEPDSSFSESGDANEEAKKEKDLMAESETMLVQKTIGALVHVLGKNTLQTDGVAS
YDDSEFIEAWPTKKDMGYLFEFIACYVACGRAKIPKTVLNQILEYLTSVNDSSQSVSTMS
TERSKRREKQLLALLEVVPETDWDQSYVLQLCENACFYQVCALIHTIRHQYLAALDSYMK
DVEEPIHAFAFINNMLMRLSNGDYTIFRSAVISRIPELVNLSRELTFFLIVDHFKDESSH
ILSELNSHPKSLFLYLKTVIEVHLSGTFNFSCLREEEIVDVLSEKRGKESEKVLKAFLKN
LSNFPKYLRHNPLHVTDDMIELYLELLCQFERDSVLKFLETFDSYRVEHCLRLCQEHGII
DAAAFLLERVGDVGSALLLTLSSLNDKFTELDTAIGNAVSKVSLSRSGSMEYFNSILKMK
EVNDIRNLLQACIELCQRNTPRLNPEESEMLWFRLLDSFCEPLMGSYCNDMVSEKENHAG
LVGSLGSQDEEECIIKWRIPKSHKGGHILRKLFSQFIKEIVEGMIGYVRLPTIMSKLLSD
NVGQEFGDFKLTILGMLGTYGFERRILDTAKSLIEDDTFYTMSLLKKGASHGYAPRSLLC
CICNSLLTKTSSSFRVRVFSCGHATHIQCELLENESSTRGLSSGCPVCLPKKNTHKSRSK
TALTENGLVSSLPSRSQPAQGSTLHPHENDALDNSYGLQQISRFEILSNLQKDQRLAQIE
NLPQLRLAPPAIYHEKVKKGSGVLAAGESSSQVGGIQKPNKNKQLKDLKLKGSSLRFPLK
SSIFGKEKTSKP
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgacctcgacacgttacttgactcacacttctccgattccgacgacgattcc
aactcaatcgttcctcaccgtaccatcgatgaaatcctcaacgattcagatgcatccacg
tcatcttcttcgccttcatcccctctctcttcttatcaacgttccgataaccgccttgcc
cggtcgaataccgttccgcaagaattcgtggaattgctagaggaaagagatgctctttca
gaaggaccggcggaatcgtcgaagactagtccgttcaagcggattggtgatccggtttgg
agggtttcgtcatcatcttcttcgaaacagcttccgacgctgtttggtggagtgaaatcc
aatgcgaaaccaggggctgcgctcgcggctgcggctgcggcgtctaggtcggttccgact
ccacatgcggctgctatcaagtcgaggagggcggtaagtggtggggttcttcagagggtt
gtaggtagtgatgatcaggatgttagctcagtgaatggggaatcgattggggttagctcg
aaatcaagcgtttcaggtgaaaaattagaaattgatgattatactagtgataataaaatg
ggcgattttcaatctgctgatacccatcaaaatagtgaggctagtgagagtaaagataag
gaaagtgaagctgagagagtaattgaacgaattgacggctcttctaagcttgattttgat
gacagcttgaataaagaagttacagttttgggttcgggtgaagttttagataatgaaatt
gaccctgtttctgtgtctgagaattctctggttcttgatgccaatgattcatatgaaaag
agtgttttgtctttgcctagcgttgatcaggagagaaatataagtaaggacttggagagg
gtgggtttggaaagagagaacgtagcaagtgatatgcccagttacgaagatggtgaggaa
aatgctagtggtggtgacgataaaagttcaatgagtgatatttcagagcttgtagaggag
agattggagcaactagagagtgagatgatgagtaaaagggtggaaagcaatgcacgtgct
acaatgaagccgcttgaactggctgaggagcttgagaagaaacaggcttcgactggtttg
cattgggaggagggtgcagctgctcaacccatgaggcttgaaggtgttcggaggggttca
accacgttgggatactttgatgttgatgctagcaatataatcactcggactctttcatca
caggcattcaggcgtgatcatggctcccctcaagttttggcagttcatctgaacttcatt
gccgtaggaatgactaaaggagtcatcgtcttagtccccagtaaatataccactcatcat
gctgacagcatggatcctaagatggtgatacttggtttgcaaggggatcggtcccttgcc
cctgtaacatccatgtgcttcaatcagccaggagaccttctcttagctggctatggtgat
ggccatgtcacagtttgggatgttcagagggcatcagcaacaaaagttattgctggagaa
cataatgctccagtgatacatacattatttctggggcaggattctcaagttactcgccag
tttaaagctgttacaggtgatagtaaaggcttggtgctgttacatgctttctcagttgtt
cccttgcttaataggttctcaatcaaaacacagtgtcttcttgatggacaaaaaacgggc
accgtattgtcagcttccccacttctttttgatggttcatatgggagcacttcagtgacc
tctcaagggaatgctacttctactagcagtattggtagcaagatgggaggcgtagttggg
ggagatgcaggttggaaactcttcgctgaaggctcttctatggctgaagaaggtgtggtc
atatttgtcacctatcaaactgctctggtggtaaggcttactccaacattagaagtctat
gcgcaactttctaggccggatggtgtgcgggagggttccatgccatacactgcatggaca
tgtatggcgcagccttgtggatcttcatcagaaaattcaccgacagaaactggagagaga
acttcacttcttgcacttgcatgggatcggaaagttcaggttgcaaaattggttaaatca
gacctaaaagtatatgggaaatggtctcttgacagttcagccattggtttggcttggttg
gatgatcagatgatggtggttcttacaatgacaggaaaactcaacttgtttgctagggat
ggaaccctgattcaccaaacaagttttgctgtagatggcttgggaggagatgatctcatt
acatatcatactcactttattaatatctttggaaaccctgaaaaagcttatcataattgt
gtatctgtaagaggagcatctgtatatatactaggacctatgcatcttactgtctgccgt
ctccttccatggaaggaacgaattcaggttctacggaaagccggtgactggatgggagct
ttgaacatggcaatgacactttatgatggtcaagcccatggtgttattgaccttcctaga
aacctggatgcggtgcaggagaccataatgccctatcttgtagagttgcttttgtcgtat
gtggatgaagtgttttcctatatttctgtggcattaggtaaccaaattggtaaggcggag
cagccagatgaccaggaaagtagaaatggttccgtgcactcagaaataaaagagcaattc
acccgtgttggtggtgttgctgttgaattttgtgtccatatcaggaggactgacattctt
tttgatgaaattttctccaaattcgtggctattcagcaaagagatacatttttagagctt
ctggagccatacatattgaaggacatgcttggatgtttgcctcctgagataatgcaagtg
ctggtagaacattacagcagcaaaggatggttgcagcgagttgaacagtgtgttctccac
atggatatttcgtccttggacttcaatcaggttgtcattttatgtcgggagcatggttta
tatggtgctctggtatatcttttcaacaaaggattagatgatttcagggcgcctttagag
gagttgttagtagttttacgaaatagtcaaggggaaattgcttctggccttgggtacagg
atgcttgtttacttgaagtactgctttacaggtcttgcttttccaccaggccaagggact
cttccaccatcacgcttgttgtctcttaggactgaacttctgcagtttttgttagaggtt
tctgatcgtcaggataaaaaatcagcttcaacttcggcttttgaaggggcataccttaac
ctgtattatctcttagagttggatactgaggccactttagatgttctcaaatgtgctttc
atagaagagatatcccctgaaccggactcctctttttctgaatctggagatgcaaatgag
gaagctaaaaaggagaaagatttgatggctgaatctgaaacaatgttggttcagaaaacc
attggtgctctggttcatgttcttggtaagaatacccttcaaacagacggggttgcaagc
tatgatgactctgaatttatcgaagcatggcctacaaaaaaggacatgggatatctgttt
gagtttatcgcatgctatgttgcatgtggaagagctaaaatcccaaaaactgttctaaat
cagattttggaatacttgacttcagtaaatgacagttcacaaagtgtttctaccatgagt
actgaaaggtccaaaagaagagagaagcaattactggcacttttggaggtagtgccagaa
actgattgggaccaatcctatgtgttacagttatgtgagaatgcatgcttttatcaggtt
tgcgccttaattcataccatcagacatcagtatcttgctgctctcgacagctatatgaaa
gatgtggaagagccaattcatgccttcgcatttatcaacaacatgttaatgcggttgagc
aatggagattatactattttcagatcagcagtcatctctcgaattccagagctggttaat
ttaagcagagagttgacattcttcttaattgttgaccattttaaagacgaaagctctcat
attctatctgaacttaactctcatccaaaaagccttttcctttacttaaagacggtcatt
gaggttcacttatcaggcaccttcaacttctcttgtttaagagaagaagagattgtagat
gtcttgagtgaaaaaagggggaaagaatcagaaaaggtccttaaagccttcttgaaaaat
ttgtctaattttcccaagtatctgcgacataatcctcttcatgtaactgatgatatgatt
gagctttatctggagttattatgtcagtttgaacgggattcagttctcaagttcttggaa
acttttgatagctatcgagttgaacactgtctccgcctgtgccaggaacatggaattata
gatgcagctgcatttttattagaaagggttggtgatgttggtagtgctcttttgcttaca
ctttctagccttaatgataaatttacagagcttgatactgccatcggaaatgcggtctct
aaggtatctttgagtagatctggtagcatggagtatttcaactctattttgaaaatgaag
gaggtgaatgacatacgcaatttattgcaagcctgtattgaattatgccaacggaatacc
cctcgtttgaatccagaagagtctgagatgctttggtttagattacttgactcattttgt
gaacctttgatgggttcgtactgcaatgatatggtatctgagaaggaaaatcatgcagga
ctggttgggtcattgggctctcaagacgaagaagaatgcataatcaagtggaggataccg
aaatctcacaaaggtggtcatatattgaggaaattgttctctcaattcatcaaagagatt
gttgagggaatgataggatatgttcgtcttccaactattatgtcaaaactcctatctgat
aatgtcggccaggaatttggagattttaagcttaccatattgggaatgcttggaacttat
ggctttgaaagaagaattctggatactgcaaaatctttgatcgaggatgacacattttac
acaatgagcttactgaagaagggagcttctcatggatatgcacctcgaagtttactatgt
tgtatatgcaacagccttcttaccaagacctcttctagctttcgtgttcgggtttttagt
tgtggtcacgcaactcatattcaatgtgagcttctggaaaacgagtcatcaactagaggc
ttgtcatctggatgccctgtttgtttgcccaagaaaaacactcacaaatctagaagtaaa
accgctcttacagagaatggtttagttagttcgttgccctcaagatcccaaccagcacaa
ggatcaacattacaccctcacgaaaacgacgcactagataactcttacggccttcaacaa
atatcacggtttgaaattttaagtaaccttcaaaaagaccagagattagcccagatagaa
aatttaccacagttgaggcttgcaccgccagcgatttatcacgaaaaagtgaagaaagga
agtggagtattagcagcgggggaaagcagcagtcaagtaggtggaatccaaaaaccaaac
aaaaacaagcaactcaaggatctaaaactaaagggatcatctctcagattcccactaaaa
tctagtatttttggcaaggagaaaacaagcaaaccatag
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