Gossypium arboreum (tree cotton): 108479425
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Entry
108479425 CDS
T05776
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108479425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108479425
03009 Ribosome biogenesis [BR:
gab03009
]
108479425
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108479425
Spliceosome [BR:
gab03041
]
Complex A
U2 snRNP components
U2 related factors
108479425
Complex B
108479425
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108479425
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
90S particles
Helicases
108479425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_7
FtsK_SpoIIIE
Flavi_DEAD
AAA_30
AAA_33
NACHT
TsaE
Motif
Other DBs
NCBI-GeneID:
108479425
NCBI-ProteinID:
XP_017637494
LinkDB
All DBs
Position
6:88776648..88780198
Genome browser
AA seq
725 aa
AA seq
DB search
MGTERKRKVSLFDVTDEPSAKIAKSNGLGFTETNANSSINKWNGRPYSQRYYDILEKRKT
LPVWQQKEEFLQVLRANQTLILVGETGSGKTTQIPQFVLDAVDIETPDKRRKMMIACTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLER
YKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEVG
NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKLGEIMSEFPLDPQMSKMLVVSSEFNCSNEILSVAAMLSVPNCFVRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFINHRALKAADNVRQQLVRIMSRFNL
KLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLENFPQCEAKRVLEKLYRKKEKDREE
SRNRR
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagagaaaaaggaaggtgagcttgtttgatgtaacggacgagccatcggct
aagatcgcgaaatcgaacggtttaggttttacggagacgaacgctaacagctcgatcaac
aagtggaatggacggccttattctcaaaggtattacgatattttggagaagaggaaaacc
ctccccgtttggcaacaaaaagaagagtttttgcaagtattgagggcgaatcaaaccctt
atcttggtcggtgaaaccggtagcggtaaaactactcagattcctcagtttgtattggac
gccgttgatatagaaactccggataaacgtaggaaaatgatgattgcttgtacccagcct
cgaagagtggctgccatgtctgtttcgcgtcgtgttgctgaagaaatggatgtgactatt
ggagaggaggtgggttatagtattcgtttcgaggattgcagtagtgcaaggactgttttg
aagtatttaacagatggtatgcttttaagggaagcgatgacagatcctcttttagaaaga
tataaagtgattattctcgatgaagctcatgaaagaactttggctacagatgtgctgttt
gggcttctgaaagaagttttaaagaatcgacctgaccttaagcttgttgttatgagtgct
acactagaggctgaaaagtttcagggttattttaatggtgcaccacttatgaaggttcca
ggtaggcttcaccctgtggagatattctacactcaggaacctgaaagggattacttggag
gctgcgatacggactgttgtgcagatacacatgtgtgaacctcctggtgatatacttgtt
ttcctaactggagaggaggagatcgaagatgcctgtcgcaaaataacgaaagaagtagga
aacatgggggatcaagtaggtcctgttaaagtagtgcctctatattcaactcttccacca
gcaatgcagcagaagatttttgagcctgctccacctcccgtgaaggagggtggccctcct
ggaaggaagattgtggtgtctacaaacattgccgaaacttccttgactattgatggcatt
gtttatgttattgaccctgggttttctaaacaaaaagtttataacccacgagtgcgtgtt
gagtccttattggtatctcctatatcaaaggcaagtgcacatcaaagatctggacgtgct
ggaagaacacaacctgggaaatgcttcaggctctacactgagaagagttttaataatgat
ctgcagccgcagacctatcctgaaatattacgttcaaaccttgcaaatacagttctcacc
ttgaagaaactaggaattgatgatctggtacattttgattttatggacccacctgctccg
gagacattgatgcgtgcattggaagtgttgaattacttgggagcattggatgatgagggt
aacttaacaaagttgggtgagatcatgagtgaattccccttggatcctcaaatgtcgaag
atgctcgtagttagttctgagttcaactgttcaaatgagattctttcagttgctgccatg
ctttcagtacccaattgctttgtacggcctagggaggcacaaaaagctgcagatgaagca
aaagctcggtttgggcatatcgatggtgatcatctcacgcttttgaacgtgtaccatgct
tacaaacaaaacaacgaggatcaatcttggtgctatgagaatttcatcaaccatagagcg
ctgaaggctgctgataatgttagacaacagctcgtgcgcattatgtccaggtttaatctc
aagctttgcagcactgatttcaacagccgtgactactatgtcaacattagaaaggccatg
cttgccgggtatttcatgcaggtagctcatctggagcgcacggggcactacttgacagtt
aaagacaaccaggtggtgcacttgcatccatcaaattgcctggatcacaagccagagtgg
gtcatctacaacgagtatgtcctgacaagccggaattttattcgtactgtgacagatatt
cgtggtgaatggttagttgatatagcaccacattattatgatctcgaaaacttcccacag
tgtgaggcaaagcgagtcctcgaaaagctttacagaaaaaaggagaaggatcgggaggag
agtcgaaacaggagatga
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