Gossypium arboreum (tree cotton): 108479440
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Entry
108479440 CDS
T05776
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL-like isoform X2
KO
K12133
MYB-related transcription factor LHY
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108479440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gab03000
]
108479440
Transcription factors [BR:
gab03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
108479440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
108479440
NCBI-ProteinID:
XP_017637515
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All DBs
Position
12:complement(92773033..92779799)
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AA seq
764 aa
AA seq
DB search
MGTYSSGEELVIKTRKPYTITKQRERWSEEEHNRFLEALKLYGRAWQRIEEYIGTKTAVQ
IRSHAQKFFSKLEKEALAKGVPIGQALDIEIPPPRPKRKPSNPYPRKTGAATTVQEGAKD
GKSEMPLSSLRCKQMLDLEKEPLPERPTGDEKATNLKENEDQSCSEVFTLLHEQNCSSAS
SMNKNFIPMSTALKSSCTFREFVPLPKEVVNHEKHEFYVILELKEICEPYKLNVQQTFHD
SGTSKASNLEKSCTSYEKSAQGQRKDDLDGDFCADEMQAAQNYPRHVAVHVLDGSLRTCV
QNPSLGMSFQDSVFHPTGDVHGPNLFANPAASATTEHKNNAPKSTHQALPPFHTPFIHLR
PDQEEYRSFLHVSSTFSNLIVSTLLQNPAAHAAASFAATFWPYANIESSGDSPANELRGF
PSTQMNSAPSMAAIAAATVAAATAWWTAHGLLPICAPLHTGFTCAPASTAAVPPMENGQI
PAANMEQKDKTDLALTTQDERLYPEYSESLPGQHSASKSPTSSSSDCEERVDAKANTEVK
ATDDEKAAEVIEPQDADKMKNRKQVDRSSCGSNSSSEVETDMLEKLEKDKEDSKGADPNH
PQVECNRRSRSSSNLSDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDGKNKGQQKENVG
TDKQNPVEKDGETSTLDLNRKMLDSRSDRQEVEKNALSKDEKNNAEDGLLRIGLGHAKLK
ASRTGFKPYKRCSVEAKENRVMNTGSQGEERGPKRVRLEGEAST
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgggcacatactcctctggtgaagaactagttattaagactaggaagccttatactatt
acgaaacaacgtgaaagatggagcgaggaagagcataataggtttctagaggccttgaag
ctctatggacgagcttggcaacgcattgaagaatatataggaacaaagacggctgtgcag
atcaggagtcatgctcaaaagttcttttcaaagttggagaaggaggcacttgctaaaggt
gtaccaataggtcaagctcttgacatagagattccacctccacgccctaaaagaaaacca
agcaatccttatcctcgaaaaactggtgctgctactacagtacaagagggagctaaggat
ggaaaatctgaaatgccattatcttctttgcgttgcaagcaaatgttggacttggagaaa
gaaccacttccggagagacctactggagatgaaaaggctacaaacctgaaagaaaatgaa
gaccagagttgctctgaggtttttacccttctccacgaacaaaactgctcctctgcgtct
tccatgaataagaattttataccaatgtcaactgcactcaaaagctcttgtacattcagg
gagtttgtacctttgccaaaagaggtagtaaatcatgaaaaacatgaattctatgttatt
cttgaacttaaagaaatttgtgaaccttataaacttaatgtccaacagacatttcatgat
agtggtacaagtaaggcttcaaacttggagaagtcttgcacttcatatgagaaatcagct
caaggccagagaaaagatgatttggatggtgatttttgtgcagatgagatgcaagctgct
caaaattatcctcggcatgttgctgtgcatgtcctagatggaagccttagaacatgtgtt
caaaatccttccctgggtatgtcatttcaagattctgtatttcaccctacgggcgatgtt
catggacctaacctgtttgcaaatccagctgcatcagcaactactgaacataagaataat
gcaccaaaatctactcatcaggcattgccaccttttcatactccctttatacatcttcgg
cccgatcaagaggagtatcgatcctttctacatgtcagctctactttttccaatctcatt
gtatctactttgttacagaatccagctgctcatgctgcagcaagttttgcagctacattt
tggccatatgcaaacattgaaagttctggcgattctcctgcaaatgaactaagaggtttc
ccatctacacaaatgaactctgctcctagtatggccgcaattgctgctgcaacagtagca
gctgccactgcatggtggaccgcccatggactgcttcctatatgtgctcctctgcacaca
ggctttacctgtgctcctgcatccactgctgcagttccaccaatggagaatggtcaaatt
ccagctgcaaatatggaacaaaaagataaaactgatctagccctaactactcaggatgaa
cgactataccccgaatactctgaatctttgccaggtcagcattcagcatctaaatcacct
acttcatcatcatcagactgtgaagagagagtagatgcaaaagcgaatactgaagtgaaa
gctactgatgatgagaaggctgctgaagtaattgagcctcaggatgcagataaaatgaag
aacagaaaacaagttgaccggtcctcatgtggttccaattcaagtagtgaggtagagaca
gacatgttagaaaaacttgaaaaagacaaggaagattcaaaaggagctgatccaaatcat
ccacaagttgaatgtaaccgtcgtagtagaagcagcagtaaccttagtgattcttggaag
gaggtatctgaagagggacgactggcttttcaagccctcttctccagagaggtacttcca
caaagcttctctcctccacatgatgggaagaacaaggggcagcaaaaggaaaatgtaggt
acagacaagcaaaatccagtcgagaaagacggagagacatcaacattagaccttaataga
aagatgttagattctcgttctgaccgtcaagaagtagagaaaaatgcactatcaaaagat
gagaagaacaatgcagaagacggcctgctgaggattggactaggacatgcaaaacttaag
gccagccgaactggatttaaaccttacaaaaggtgttctgtggaagccaaggaaaataga
gtgatgaacaccggcagtcaaggtgaagagagaggtcccaagagggtacgattagaaggg
gaagcttcgacttga
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