Gossypium arboreum (tree cotton): 108479491
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Entry
108479491 CDS
T05776
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108479491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108479491
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108479491
Spliceosome [BR:
gab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108479491
Complex C
U4/U6.U5 tri-SnRNP related factors
108479491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
AAA_19
AAA_30
PWI
nSTAND3
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
108479491
NCBI-ProteinID:
XP_017637620
LinkDB
All DBs
Position
12:109101132..109107547
Genome browser
AA seq
1067 aa
AA seq
DB search
MSGNSNFGGGGGNPLKTWVSDRLISLLGFSQPTLVEYTIGLAKQAASPADVLGKLEEYGL
PSSNEVQLFAEEIFGKVPHKASRENFYQKQEREAAVFARKQKTYALLDADDEEEEAGTNT
SLHRLSSNEPASETRKGDKHKKRFRKKNESEQDEDDEEVIHVDEKKRVKRQAEDDGSESE
EERLRDQREREDLERHIRERDAAATRKLMEPKLSRKEEEEAIRRSKALEQDDINSLRKVS
RQEYLKKREQKKLEELRDDIEDEQYLFDGVKLTEAEYRELQYKKEIYELVKKRTEEDDDI
GEYKMPEAYDQEGIVDQEKRFSVALQRYRDPTAGDKMNPFAEQEAWEDHQIGKATLKFGS
KNKKQTTDDYQFVFEDQIEFIKASVMDGDKFDNEMSTDSPETTKAKSELEKLQEDRKTLP
IYPYRDDLLKAVEEYQVLVIVGETGSGKTTQIPQYLHEAGYTKSGKVGCTQPRRVAAMSV
AARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLRELLGEPDLASYSVIMVDE
AHERTVSTDILFGLVKDIARFRKDIKLLISSATLDAEKFSDFFDSAPIFKIPGRRYPVEI
HYTKAPEADYLDAAIVTVLQIHVTQSPGDILVFLTGQEEIETAEEILKHRVRGFGTKIAE
LIICPIYANLPTELQAKIFEPTPIGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYN
PRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYNYYTELDDNTPPEIQRTNLA
SVVLSLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLD
PMLSKMIVASDKYKCSDEVISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIA
LMKVYNSWRETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSCPNDLEAIK
KAITSGFFPHSARLQKNGSYRTVKHPQTVYIHPSSGLAQALPRWVVYHELVLTTKEYMRQ
VTELKPEWLVEIAPHYYQMKDVEDAGSKKMPKGQGRAAEQPPVSGKV
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaattcaaatttcggaggagggggaggtaaccctttgaagacttgggtctct
gataggttgatatcattgctgggattttcccagcctacacttgttgaatataccattggg
ctagctaagcaagcagcatcacctgctgatgtacttggcaagcttgaagaatatggcttg
ccatcgtctaatgaagttcaattatttgccgaagaaatctttggtaaagttcctcacaaa
gcctcccgtgaaaatttttatcagaaacaagaaagggaagctgctgttttcgctaggaag
caaaagacctatgcacttttagatgctgatgacgaagaagaagaagccggtaccaatacc
agtcttcatcgcctgtcttccaatgagcctgcttccgagaccagaaaaggtgataaacat
aagaaaagattcagaaagaagaatgaaagtgaacaagatgaagatgacgaggaggtcata
catgtggatgaaaagaaaagagttaaaagacaagctgaggatgatggttcagagtcagag
gaggaaagattgcgtgaccaaagagagagggaggatttggagagacatataagggaacgt
gatgctgcagcaactaggaagttaatggagccaaagctttcacgaaaggaggaagaggag
gctatacgaagatctaaagctttggagcaagatgacatcaatagtttaaggaaagtttca
agacaagagtatttgaaaaagagggagcaaaaaaagcttgaggagcttagggacgatata
gaagacgagcaatacctttttgatggtgtaaagcttactgaagcagaatatcgtgagtta
cagtataagaaagaaatatatgagcttgtgaagaagcggacggaagaggatgatgatatt
ggtgagtataaaatgccagaagcttatgatcaagaagggattgttgaccaggagaagaga
ttttcggtggctcttcagcgttatagagaccctactgctggggataaaatgaatccattt
gcagaacaagaggcctgggaagaccatcaaattggcaaggccacattgaaatttgggtca
aaaaataaaaagcaaactactgatgattatcagtttgtgtttgaggatcagattgagttt
attaaggcatcagttatggatggtgacaagtttgataatgagatgtcaactgactcacct
gaaacaaccaaggcaaaatctgaactggagaaactacaggaggaccggaaaactttgcca
atttatccatatcgagatgatctacttaaagctgttgaagaatatcaggttcttgttatt
gtaggagaaactggttcaggaaagaccacacagataccacaatatcttcatgaagctggt
tataccaaaagtgggaaggttggttgtacacagcctcgacgagttgctgctatgagtgtt
gctgctcgagtttctcaagaaatgggtgtcaaacttggccatgaggttggttattctatt
cgttttgaagactgcacttcagaaaagactgtattaaaatatatgacagatggtatgctg
ttgcgggagttgcttggtgaacctgatcttgcaagctacagtgtgataatggtggatgag
gctcatgaaagaactgtatcaactgatattctttttggattggtgaaggatatagcacga
tttagaaaagatatcaaattacttatttcaagtgcaacacttgatgcggagaagttcagt
gatttttttgattctgctccaattttcaaaattcctggtagacgttatcctgttgagata
cactacacaaaagcaccagaagctgattacctggatgctgcaattgttaccgtacttcaa
attcatgtgacacagtcacctggagatattttggtttttctcactggtcaagaagaaatt
gagacagcagaagaaattttgaagcatagggtaagaggctttgggacaaaaattgcggaa
cttattatctgcccaatatatgccaaccttccaactgagcttcaagccaaaatatttgaa
cctactcctattggtgcacggaaggtagtcctggcaacaaatattgcagaaacatcatta
acaattgatggtattaagtatgtaattgatccaggtttctgcaagatgaaatcttataat
ccgaggactgggatggagtctttgctggtaactcctatatctaaagcttcagctaatcaa
cgcgctggtcgatctgggcgaacgggtccgggaaagtgttttcggttgtacactgcctac
aattattatactgaattggatgacaatactcctcctgagatacaacgaaccaaccttgcc
agtgttgttctttctttgaagagtcttggaattcatgatttgctaaattttgattttatg
gatccaccgccagctgaggctctactgaaagctttggaacttttgtttgcattgagcgca
ttaaataaacttggagagttgactaaagttggtagacgaatggcggagttccctcttgat
ccaatgctatccaaaatgatagttgcttccgacaagtacaagtgttcagatgaggttatt
tctattgctgctatgctttcagtggggaattcaatcttttaccgtccaaaggacaaacaa
gttcatgctgataatgcaaggatgaattttcatactggcaatgttggtgatcatatcgct
ttaatgaaggtttacaattcctggagggaaacaaatttctcaacacagtggtgttacgaa
aattatattcaggtcaggagcatgaagcgtgcgagagacattagagatcaattagagggt
cttctggagagagttgaaattgaactaacatcctgtcctaatgatttagaggctataaag
aaggccattacatctggatttttccctcattcggcaaggttacagaaaaatggttcttac
cgtactgttaagcatccacagactgtttatatacatccaagctcagggttggcacaggcg
ctcccaagatgggtggtataccatgaattggttcttaccaccaaagaatacatgagacaa
gtaactgagctgaaaccggaatggttggtggaaatagccccacattactaccagatgaag
gacgtcgaagatgctggatcaaagaaaatgccgaagggacaggggcgagcggcagagcaa
ccaccggtttctggtaaggtttag
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