Gossypium arboreum (tree cotton): 108479498
Help
Entry
108479498 CDS
T05776
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108479498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108479498
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108479498
U7-dependent histone pre-mRNA processing factors
108479498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
108479498
NCBI-ProteinID:
XP_017637632
LinkDB
All DBs
Position
6:121149315..121155295
Genome browser
AA seq
742 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDPSLLQPLSRVASTVDAVLL
SHSDTLHLGALPYAMKQFGLSAPFYSTEPVHRLGLLTMYDHYLSRKQVSDFDLFSLDDID
AAFQSITRLTYSQNYHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNRRKE
KHLNGTVLESFVRPAVLITDAYNALNNQPPKPQRERDRDFVEIISKTLEGGGNVLLPVDT
AGRVLELLLVLEENWSLKSLNFPIYFVTYVSASTLDYVKSFLEWMSDAIAKSFETSRDNA
FLLKNIKLLTSKSELDSVPDGPKVILASMASLEAGFSHDIFVEWAADVKNLVLFTERGQF
GTLARMLQADPPPKAVKVTMSRRVPLTGEELIAYEEEQNRLKKEEALKASLIKEEESKAS
LANDVNSSDPMVIDTHNKHPSLDGLGQHGSRFRDVLIDGFVPPSSSVAPMFPFYDNTSDW
DDFGEVINPDDYVIKDEDMDQGAMRTGGDMDGKLDEGSASLILDTTPSKVISNELTVQVK
SSLVYMDYEGRSDGRSVKSILAHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIE
ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENDMLSLLPISTPAPP
HKSVVVGDLKMADFKQFLASKGVKVEFAAGALRCGEYVTLRKVGVASQKGGGSGTQQIII
EGPLCEDYYKIREYLYSQFYLL
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggggacgtcggttcaggtaaccccactctgtggagtatacaacgagaaccctctctct
tacttagtctcaatcgacggcttcaacttcttaatcgactgtggatggaatgacctcttt
gacccctcccttcttcaacccctctccagggttgcttcgacggtagacgcggtgttgctg
tcgcattcggacacgctccacctcggtgctcttccgtacgctatgaaacaatttggactc
tcggctcccttttattccactgaaccggttcatcgattaggccttctcactatgtacgat
cattatctctctcgtaagcaagtatcagacttcgatttgttctccctggatgacattgat
gctgctttccagagtataactcggctaacctactcgcagaattatcatttatctggaaaa
ggtgagggtattgtaattgctcctcatgttgctggccatctattgggtggtactgtttgg
aagataacaaaggacggagaagatgtcatttatgctgtcgattttaaccgacgcaaagag
aagcatttgaatggaactgttctagaatcttttgttcggcctgctgttcttataactgat
gcctacaatgctttgaacaatcaacctcctaagccgcaaagggagagggacagagatttt
gttgaaatcatctcaaagactctagaaggtggtggaaatgtgttgctacctgtcgatacc
gctggtcgtgtcttggaacttctcttagttttagaagagaactggtcattgaagtctttg
aacttccccatctactttgtgacatatgtttcagcaagcacacttgattatgtcaagagt
tttcttgagtggatgagtgatgctatagctaaatcctttgaaacttcacgtgataatgct
tttcttctgaagaatatcaaacttttaacaagcaagagtgaacttgatagcgtgcctgat
ggtcccaaggttatactagcatccatggccagcttggaagcaggattttctcatgatatt
tttgttgagtgggcagcagatgtcaagaatcttgttctatttactgaaaggggccagttt
ggcacgttagctcgtatgcttcaggcagatccacctccaaaagctgttaaagtcacgatg
tctaggagggttcctttgactggggaggagttgattgcttatgaagaagagcagaaccgg
ttgaaaaaagaagaagctttaaaagctagtcttatcaaagaggaagaatctaaagcttct
cttgcaaacgatgtcaattctagtgatccaatggttattgacactcataataagcatccc
tcactggatgggttaggtcaacatgggagcagattccgtgatgttctgattgatggattt
gtgcccccatcctctagtgttgccccaatgtttcccttctatgacaatacttctgattgg
gatgattttggtgaggtcataaatcctgatgattatgtaataaaggatgaagatatggac
caaggagctatgcgtactggtggggatatggatggcaaacttgatgaaggctctgctagt
ttgatacttgacacaacaccttcaaaagttatatctaacgaattgactgtgcaagtaaag
tcttcacttgtttacatggattatgaggggcgttccgatggtcgttctgtcaaatcaatc
cttgcccacgtggctccattaaagcttgtcttggtgcatggatcagcagaggcaacagag
catttgaagcaacattgcttgaaacatgtttgtcctcatgtttatgctccccaaattgaa
gaaacaattgatgtcacatctgatttatgtgcttataaggtacaattatctgagaagttg
atgagcaatgtcctctttaaaaagttaggagactacgaaatagcttgggtggatgctgaa
gtagggaagacagaaaacgacatgctctcattactacccatctcgacaccagctcccccg
cataaatctgtggttgtaggtgatctgaaaatggcagatttcaagcagtttcttgccagt
aagggtgtcaaggtagaatttgctgcaggggcgttgcgatgcggtgaatacgtgacatta
cgcaaagttggggttgcaagccaaaagggtggtggttctggtacacagcaaatcataatc
gaaggtcccttgtgcgaagattactacaagatacgggaatatctatattcccagttttat
ttactttag
DBGET
integrated database retrieval system
