Gossypium arboreum (tree cotton): 108479547
Help
Entry
108479547 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108479547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108479547
03009 Ribosome biogenesis [BR:
gab03009
]
108479547
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108479547
Spliceosome [BR:
gab03041
]
Complex A
U1 snRNP components
U1 related factors
108479547
Complex B
108479547
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
Pre-60S particles
Helicases
108479547
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
108479547
NCBI-ProteinID:
XP_052877472
LinkDB
All DBs
Position
11:3903122..3907528
Genome browser
AA seq
623 aa
AA seq
DB search
MTPYDRRYGDPQSYRQRRSDFMGQPPPVGPTTMGPGMAMPSSYPRGGQIPYGGPPTAHPP
SFHGRVHGPVRGQGDFDSYSSFRPPVGRFEMGRGGDIGHSHADRRSDGIRGREAGRGGGG
RGGGGRGGGGRGYGGRHGGSSRGDLDNVSLPRQNFGKLVPFEKNFYIESPAVREMTEQEV
MFYRRTRDITVQGHDVPKPIRMFRDANFPDYCLEVIANLGFVEPTPIQAQGWPMALKGKD
LIGIAETGSGKTLAYLLPALVHVNAQPRLVHGEGPIVLILAPTRELAVQIQEEAAKFANH
ANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQNTNLKRVTYLVLDEADRM
LDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVESLARQFLSNPYKVIIGSPDLKANQSI
NQVVEVITDPEKYNRLIKLLKDLMDGNRILIFMETKKGCDQVTRQLRMDGWPALSIHGDK
NQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRA
GAKGTAFTFFTQANAKYARDLIKLLQDAGQVVSPALSTLARSAGSKFGGSGGNFRSRGRG
GYGNRAMISGSNAVSLGAKKRPW
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgactccttacgaccgaagatatggcgacccccaatcttaccgtcagcgtagaagtgat
tttatgggccaaccgcctccggtaggtccaactactatgggtccaggaatggccatgcct
tcctcttacccccgcggcggacaaattccttacggtggccctcctacagcgcaccctccg
tcttttcatggaagagttcacgggcccgtccgaggtcaaggggatttcgattcgtactcg
agcttccggccacccgtgggaagattcgagatgggccgcggtggggacataggtcattct
catgcagacaggagaagtgatgggataagaggtcgtgaagccggccgtggtggaggcggt
agaggcggtggtggccgtggcggcggcggaagaggttatggagggaggcacggagggtcc
tctagaggggatttagacaatgtttcgcttccaaggcaaaattttggcaagttggttcct
tttgagaagaacttttatatcgaaagtcctgcagttagagaaatgacagagcaagaagta
atgttttatcgtagaacacgggacattacagttcaaggacatgatgttccaaaaccgata
aggatgttccgtgatgccaattttcctgattactgtcttgaggtgattgccaatttgggt
tttgttgagccaactccaattcaagctcagggctggcctatggctttaaagggtaaagat
ctaattgggattgctgagactggttctggaaaaacactggcatacttactgccagcattg
gtgcatgttaatgcacagccacgattggtgcatggtgagggtcctattgtattaatatta
gcacctacgagggagttggctgttcaaattcaagaagaagctgcaaagtttgcaaatcat
gctaacataaggagtacttgcatctatggtggtgctcctaagggaccacaaattagggat
cttaaaagaggtgttgagattgtaattgccacacctggtcgactgatagatatgctagaa
gctcaaaacacaaacttgaaaagagtgacttaccttgttctggatgaagctgatagaatg
ttggacatggggtttgagcctcaaataagaaagattgtttctcagattcgacctgataga
caaacattgtactggagtgcaacgtggcctaaagaagttgaatctttagcaaggcagttt
ttaagcaacccatataaggttatcattggatcacctgatctgaaagcaaaccaatctatt
aaccaagttgttgaagtcataacagatccagaaaagtacaacaggctaatcaaattgctg
aaggatctgatggatgggaaccgaatactaatattcatggagacaaagaagggatgtgac
caagttactaggcagctcagaatggatggatggcctgccctgtccatccatggtgataaa
aaccaggctgaaagagattgggtcctggctgaatttaaaagtggccgaagtcctataatg
actgccactgatgtggctgcacggggtcttgatgtaaaggacataaagtgtgtgatcaac
tacgattttccttcgagtctggaggattatgtacataggattggtagaactggtcgagca
ggggctaagggaactgcttttaccttcttcacacaggcaaatgcaaagtatgctagggac
cttatcaagctcctgcaagatgctgggcaggttgtctcccccgcattgtctacattggct
cgttctgcaggttcgaagtttggaggttctggaggaaactttcgctcccgaggacgcggc
ggctatggtaaccgggctatgatatcaggatcaaatgctgtatctctcggtgcaaagaag
agaccctggtag
DBGET
integrated database retrieval system
