KEGG   Gossypium arboreum (tree cotton): 108480576
Entry
108480576         CDS       T05776                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03030  DNA replication
gab03410  Base excision repair
gab03420  Nucleotide excision repair
gab03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108480576
   03410 Base excision repair
    108480576
   03420 Nucleotide excision repair
    108480576
   03430 Mismatch repair
    108480576
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gab03032]
    108480576
   03036 Chromosome and associated proteins [BR:gab03036]
    108480576
   03400 DNA repair and recombination proteins [BR:gab03400]
    108480576
DNA replication proteins [BR:gab03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    108480576
  DNA Replication Termination Factors
   ELG1-RFC complex
    108480576
Chromosome and associated proteins [BR:gab03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    108480576
DNA repair and recombination proteins [BR:gab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     108480576
  Check point factors
   HRAD17(Rad24)-RFC complex
    108480576
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Mg_chelatase Rad17 AAA_16 Viral_helicase1 AAA_28 AAA_19 AAA_11 nSTAND3 AAA_5 AAA_24 RuvB_N DUF5119 AAA_assoc_2 bpMoxR AAA_25 IstB_IS21 AAA_18 AAA_30 T2SSE AAA_3 RNA_helicase MeaB NTPase_1 cobW AAA_7 ABC_tran AAA_29
Other DBs
NCBI-GeneID: 108480576
NCBI-ProteinID: XP_017639102
UniProt: A0A0B0MTS1
LinkDB
Position
7:50321053..50324254
AA seq 332 aa
MTSSSSSTAGGYDVPWVEKYRPSKVSDIVGNEDAVSRLQVIALDGNMPNLILSGPPGTGK
TTSILALAHELLGPVYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDE
ADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRL
MVVVDAEQVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH
VKNMVRNVLEGKFDDACFALKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
AHMRICDGVGSYLQLCGLLAKFSRVCETAKAT
NT seq 999 nt   +upstreamnt  +downstreamnt
atgacgtcctcttcatcgtccaccgccggcggttacgacgtgccttgggtagaaaaatac
aggccgagcaaagtctcggacatcgtcggcaacgaagatgccgtgtctcgactccaagtc
attgctctcgacggcaacatgcccaatctcatcttatccggtcctcctggaactggtaaa
acaactagtattttggctcttgcacatgagcttttggggccagtctataaggaggctgtt
ttggagcttaatgcatcagatgacaggggtatagatgtcgttcggaacaagattaagatg
tttgctcaaaagaaagtaactttacctcctggacggcacaagataattattttggatgaa
gctgacagcatgacatctggtgcacaacaagccttgaggaggacgatggaaatatactca
aactctactcgatttgctcttgcttgcaatacatcatcaaaaatcattgaacctattcag
agtagatgtgcccttgttcgattttcaaggttatctgatcaggagattctaggccgtcta
atggtggtagtagatgcagagcaggtaccgtatgttccggaaggtcttgaagctatcatt
ttcacagctgatggtgatatgagacaggcgttgaacaacttgcaggctacatacagtgga
ttccgttttgtcaatcaagaaaatgttttcaaggtttgtgaccagcctcatccattgcat
gtgaaaaatatggtccgcaatgtacttgaagggaaatttgatgatgcttgtttcgctctg
aagcaactctacgatttgggctattctcctactgatataatcactacccttttcagaata
ataaaaaattatgatatggccgagtacttaaaactggaattcatgaaggaaactgggttt
gctcatatgaggatctgtgatggagttggttcatatcttcagttgtgcggtcttctggca
aagttttctcgagtttgcgaaactgctaaagcaacataa

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